CX300396

Overview
NameCX300396
Unique NameCX300396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14254 contig Ccv1_Contig14254:1545..2114. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 5.221e-41
Identity = 84/195 (43.08%), Postives = 114/195 (58.46%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDE---------VMFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHG----SGLGDYFCSVYVVLCFFPFLRGL 548
            FRQCLAYL +L W LR+  ELCY  L  YCI+TN +FLPK  E    +PLALF+ Y  Y  +EY+  GLS R+WW N+ M RI++ SAW    +   L+  G SE VFE+T K    SD D+           FD  P F+P T + ++++ A   G  R+    A G     G+G++ C  ++VLCFFPF+RG+
Sbjct:  537 FRQCLAYLIVLGWPLRAPFELCYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFMEYMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALAMLNIVAVTVGACRVAFGTAEGVPCAPGIGEFMCCGWLVLCFFPFVRGI 731          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.221e-41
Identity = 84/195 (43.08%), Postives = 114/195 (58.46%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDE---------VMFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHG----SGLGDYFCSVYVVLCFFPFLRGL 548
            FRQCLAYL +L W LR+  ELCY  L  YCI+TN +FLPK  E    +PLALF+ Y  Y  +EY+  GLS R+WW N+ M RI++ SAW    +   L+  G SE VFE+T K    SD D+           FD  P F+P T + ++++ A   G  R+    A G     G+G++ C  ++VLCFFPF+RG+
Sbjct:  537 FRQCLAYLIVLGWPLRAPFELCYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFMEYMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALAMLNIVAVTVGACRVAFGTAEGVPCAPGIGEFMCCGWLVLCFFPFVRGI 731          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.053e-37
Identity = 82/202 (40.59%), Postives = 112/202 (55.45%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSD----VDEV-----MFDDSPFFVPGTTIILVHLAAWATGLLR----LQSQCAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKKG 569
            FRQCLAYL +  W +R   ELCY  L  YC++TN +FL K  E    I LALFL Y  Y  +EY++ GLS+R+WW N+ M RI++ SAWL       L+  G SE VFE+T+K   +SD     DEV      FD SP F+P T + ++++ A   G  R           G G+ ++    +++LC  PF+RGL   G  G
Sbjct:  568 FRQCLAYLTLYVWAVRGFVELCYELLVPYCLLTNQSFLSKASENCFNITLALFLTYNTYNFVEYMECGLSVRAWWNNHRMQRIISASAWLLAFFTVLLKTIGLSETVFEVTRKEKSTSDGNGQNDEVDPERFTFDASPVFIPVTALTMLNIVAITIGTWRAVFGTTEDVPGGPGISEFMSCGWLLLCLLPFVRGLVGKGSYG 769          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.502e-37
Identity = 88/207 (42.51%), Postives = 121/207 (58.45%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSS------------------DVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKKG 569
            FRQ LAYL++ +WGLRSIPEL Y  LPAYC++ NS   PK     ++I L    I+ LYTL E++  G SI+SW+V     RI TT +WLF +++  L+  G S+ VF +T+K    +                  D  +  FD S +F+PGT I+LV+LAA A  L+ LQS+   GSGL +    + VV+ F PFL+G+F  GK G
Sbjct:  528 FRQSLAYLYVFSWGLRSIPELFYCLLPAYCLLHNSALFPKGVYLGIIITLVG--IHCLYTLWEFMNLGFSIQSWYVTQSFGRIKTTCSWLFSVLDVILKLLGISKTVFIVTKKTMPETKSGSGSKKSQREVDCPNQDSGKFEFDGSLYFLPGTFIVLVNLAALAGCLVGLQSRGGGGSGLAEACGCILVVILFLPFLKGMFEKGKYG 732          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.127e-35
Identity = 80/202 (39.60%), Postives = 112/202 (55.45%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVD---------EVMFDDSPFFVPGTTIILVHLAAWATGLLRL----QSQCAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKKG 569
            FRQCLAYL    W +R+  ELCY  L  YC+++N +FLPK  E    I LALF+ Y  Y  +E+I+ G S R+ W N+ M RI + SAWL   +   L+  GFSE VFE+T+K   +SD D            FD+S  F+P T + ++ + A A G  R+          G G+ ++    ++VLCF P LRGL  +G+ G
Sbjct:  526 FRQCLAYLHSYVWPVRAPFELCYALLGPYCLLSNQSFLPKTSEDGFYIALALFIAYNTYMFMEFIECGQSARACWNNHRMQRITSASAWLLAFLTVILKTLGFSETVFEVTRKDKSTSDGDSNTDEPEPGRFTFDESTVFIPVTALAMLSVIAIAVGAWRVVLVTTEGLPGGPGISEFISCGWLVLCFMPLLRGLVGSGRYG 727          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.054e-33
Identity = 82/207 (39.61%), Postives = 117/207 (56.52%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIH------------------RSSDVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKKG 569
            FRQ LAYL+I TWGLRSIPEL Y  LPAYC++ N+   PK     +++   L  ++ LY+L E++  G S++SW+ +    RI TT +WLF + +  L+  G S+ VF +T+K                     + D  +  FD S +F+PGT I+LV+LAA A   + LQ     GSGL +    + VV+ F PFL+G+F  GK G
Sbjct:  528 FRQSLAYLYIFTWGLRSIPELIYCLLPAYCLLHNAALFPKGVYLGIVV--TLVGMHCLYSLWEFMSLGFSVQSWFASQSFWRIKTTCSWLFSIPDIILKLLGISKTVFIVTKKTMPKTMSGSGSEKSQREVDCPNQDSGKFEFDGSLYFLPGTFILLVNLAALAGCSVGLQRHRGGGSGLAEACGCILVVILFLPFLKGMFEKGKYG 732          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.392e-32
Identity = 92/211 (43.60%), Postives = 122/211 (57.82%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQK------------------IHRSSDVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQ-SQCAH---GSGLGDYFCSVYVVLCFFPFLRGLFMTGKKG 569
            FRQ LAYL I+T  LRSIPEL Y  LPAYC++ NST  PK     + I + L  I+ LYTL E++  G S++SW V+  + RIV TS+WLF + +  L+  G SE VF IT+K                  +  +SD+ +  FD S  F+PGT I+LV++AA A   + LQ S  +H   GSGL +    V V++ F PFL GLF  GK G
Sbjct:  529 FRQRLAYLCIITC-LRSIPELIYCLLPAYCLLHNSTLFPKGLY--LGITVTLVGIHCLYTLWEFMSLGYSVQSWLVSQSVWRIVATSSWLFSIFDITLKLLGISETVFIITKKTVAGTKSALGSGPSQGEDVGPNSDLFKFEFDGSLCFLPGTFIVLVNIAALAVFSVGLQRSSYSHEGGGSGLAEACGCVLVMMLFLPFLMGLFKKGKYG 736          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 6.397e-31
Identity = 84/209 (40.19%), Postives = 120/209 (57.42%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEI-------TQKIHRSS-----------DVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQ-SQCAH---GSGLGDYFCSVYVVLCFFPFLRGLFMTGK 563
            FRQ LAY W L   LRSIPEL Y  LPAYC++ +S   PK   P +   + L  ++ LY+L +++  G S++SW+V   + RI+ TS+WLF + +  L+  G S+  F I       T+ ++ S            ++ +  FD S  F+PGT I+LV+LAA A  L+RLQ S C+H   GSGL +    + VV+ F PFL+GLF  GK
Sbjct:  527 FRQRLAYFWALMC-LRSIPELIYCLLPAYCLLHDSALFPK--GPCLCTIVTLVGMHCLYSLWQFMSLGFSVQSWYVVQSLWRIIATSSWLFSIQDIILKLLGISQIGFVIAKKTIPETKSVYESKPSQGEDDVPKLNLGKFEFDSSGLFIPGTFIMLVNLAALAGYLVRLQRSSCSHGGGGSGLAEACGCILVVMLFLPFLKGLFEHGK 732          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 8.355e-31
Identity = 83/214 (38.79%), Postives = 119/214 (55.61%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSS--------------------DVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQ-SQCAHGSGLGDYFCS----VYVVLCFFPFLRGLFMTGKKG 569
            FRQ LAY W+L   +RSIPEL Y  LPAYC++ NS   PK   P + I + L  ++ LYTL +++  G S++SW+V+  + RI+ TS+WLF + +  L+  G S+  F + +K    +                    ++ +  FD S  F+PGT I+LV+LAA A  L+RLQ S  +HG G G           +V+ FFPFL+GLF  GK G
Sbjct:  526 FRQRLAYFWVLMC-IRSIPELVYCLLPAYCLLNNSALFPK--GPCLGIIVTLVGMHCLYTLWQFMILGFSVKSWYVSQSLWRIIATSSWLFSIQDIILKLLGISKIGFIVAKKNMPETRSGYESKSKPSQGEDDGLKLELGKFEFDSSCHFIPGTFIMLVNLAALAGFLVRLQRSSYSHGGGGGSALAETCGCAMIVMLFFPFLKGLFEHGKYG 736          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.688e-29
Identity = 86/210 (40.95%), Postives = 119/210 (56.67%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKI--------------HRSSD---VDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQ-SQCAH---GSGLGDYFCSVYVVLCFFPFLRGLFMTGKKG 569
            FRQ +AYL +    +RSIPEL Y  LPAYC++ NS   PK     + I + L  ++ LYTL E++  G SI+SW+V+    RIV TS+WLF + +  L+  G S+ VF +++K                R  D     +  FD S +F+PGT I+LV+LAA     + LQ S  +H   GSGLG+    + VV+ FFPFL+GLF  GK G
Sbjct:  528 FRQRVAYLCVSIC-VRSIPELIYCLLPAYCLLHNSALFPKGL--CLGITMLLAGMHCLYTLWEFMCLGHSIQSWYVSQSFWRIVATSSWLFSIFDIILKLLGLSKNVFLVSKKTMPVETMSGSGIGPSQREDDGPNSGKTEFDGSLYFLPGTFIVLVNLAALVGVFVGLQRSSYSHGGGGSGLGEACACILVVMLFFPFLKGLFAKGKYG 734          
The following BLAST results are available for this feature:
BLAST of CX300396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CSLH2_ORYSJ5.221e-4143.08Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI5.221e-4143.08Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH3_ORYSJ2.053e-3740.59Putative cellulose synthase-like protein H3 OS=Ory... [more]
CSLB4_ARATH3.502e-3742.51Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLH1_ORYSJ1.127e-3539.60Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLB3_ARATH1.054e-3339.61Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLB1_ARATH3.392e-3243.60Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CSLB5_ARATH6.397e-3140.19Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CSLB6_ARATH8.355e-3138.79Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CSLB2_ARATH2.688e-2940.95Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07009G03SK SaltLeaf1 Citrus clementina cDNA clone C07009G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300396 ID=CX300396; Name=CX300396; organism=Citrus clementina; type=EST; length=570bp
AATTTCGACAATGTTTGGCTTATTTGTGGATCCTTACTTGGGGCTTGCGC
TCAATTCCCGAGCTGTGCTACATTGCCCTTCCAGCTTATTGCATCATCAC
CAACTCCACTTTCCTGCCAAAGGTCCAGGAACCAACCGTATTGATCCCTC
TTGCACTTTTTTTGATCTACAAATTATATACTCTATTAGAGTACATTCAA
GCTGGTTTATCAATCCGTTCATGGTGGGTTAACAATTGTATGGCCCGAAT
TGTCACAACAAGTGCATGGTTATTTGGTCTTGTAAACGCCGCGCTCGAGC
AGTTTGGATTCTCCGAGGCAGTTTTTGAAATTACGCAAAAAATTCATCGA
TCTAGCGATGTCGATGAAGTGATGTTCGACGACTCTCCTTTCTTTGTTCC
CGGCACCACAATTATTCTGGTGCACCTCGCTGCATGGGCTACCGGCTTGC
TAAGGTTGCAATCACAATGTGCGCATGGCTCAGGGCTAGGAGACTACTTT
TGCAGTGTGTATGTGGTGCTATGCTTCTTTCCTTTTTTGCGAGGGCTATT
CATGACAGGGAAAAAGGGGA
back to top