CX300408

Overview
NameCX300408
Unique NameCX300408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300408 vs. ExPASy Swiss-Prot
Match: CRK25_ARATH (Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.259e-23
Identity = 54/99 (54.55%), Postives = 66/99 (66.67%), Query Frame = -2
Query:  122 ENSPSRSFDQFVWNSMNEAVNQALSTTKMFATVKKNYTASQTLYSLVQCTPDLSRDDCSRCLRLAISPLDGCCSIKIGGRVMYPSCNFRYELYQFYNDT 418
            EN  SR  +      ++ AV  ALS+ K FAT K N+T  QT+YSLVQCTPDL+  DC  CLR  I+ L  CC   +GGRV+ PSC+FRYELY FYN+T
Sbjct:  154 ENQVSRFNESLPALLIDVAVKAALSSRK-FATEKANFTVFQTIYSLVQCTPDLTNQDCESCLRQVINYLPRCCDRSVGGRVIAPSCSFRYELYPFYNET 251          
BLAST of CX300408 vs. ExPASy Swiss-Prot
Match: CRK8_ARATH (Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 8.396e-21
Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = -2
Query:  110 SFFSVLDTSFRLSLWNVENSPS--RSFDQF---VWNSMNEAVNQALSTTKMFATVKKNYTASQTLYSLVQCTPDLSRDDCSRCLRLAISPLDGCCSIKIGGRVMYPSCNFRYELYQFYNDTSNGT 469
            +F S +     L + N  N  S     DQF   V ++MN+A N+A ++++ F+T+K   T+ QTLY LVQCTPDL+R DC  CL  +I+ +      +IG R  +PSCN RYELY FYN+T+ GT
Sbjct:  141 NFLSTVTYEGELIMRNPNNISSIQNQRDQFIDLVQSNMNQAANEAANSSRKFSTIKTELTSLQTLYGLVQCTPDLARQDCFSCLTSSINRM--MPLFRIGARQFWPSCNSRYELYAFYNETAIGT 263          
BLAST of CX300408 vs. ExPASy Swiss-Prot
Match: CRK15_ARATH (Cysteine-rich receptor-like protein kinase 15 OS=Arabidopsis thaliana GN=CRK15 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.870e-20
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = -2
Query:  119 NVENSPSRSFDQFVWNSMNEAVNQALSTTKMFATVKKNYTASQTLYSLVQCTPDLSRDDCSRCLRLAISPLDGCCSIKIGGRVMYPSCNFRYELYQFYNDTS 424
            +++ +    F  FV ++MN+A  +A S+ + F TVK  +TA QTLY LVQCTPDL+R DC  CL  +I  +      K GGR +Y SCN RYEL+ FYN+T+
Sbjct:  147 SIDQNQMNRFKDFVSSTMNQAAVKAASSPRKFYTVKATWTALQTLYGLVQCTPDLTRQDCFSCLESSIKLMP---LYKTGGRTLYSSCNSRYELFAFYNETT 245          
BLAST of CX300408 vs. ExPASy Swiss-Prot
Match: CRK10_ARATH (Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.443e-20
Identity = 51/120 (42.50%), Postives = 74/120 (61.67%), Query Frame = -2
Query:  119 SFFSVLDTSFRLSLWNVENSPSRSFD---QFVWNSMNEAVNQALSTTKMFATVKKNYTASQTLYSLVQCTPDLSRDDCSRCLRLAISPLDGCCSIKIGGRVMYPSCNFRYELYQFYNDTS 469
            +  S L T+  + L N  N  S   D     V  ++N+A   AL+++K F T K N+TA Q+ Y LVQCTPDL+R DCSRCL+L I+ +    + +IG R++ PSC  RYE+Y FY +++
Sbjct:  130 NILSTLITTGGVILVNTRNVTSNQLDLLSDLVLPTLNQAATVALNSSKKFGTRKNNFTALQSFYGLVQCTPDLTRQDCSRCLQLVINQIP---TDRIGARIINPSCTSRYEIYAFYTESA 246          
BLAST of CX300408 vs. ExPASy Swiss-Prot
Match: CRK9_ARATH (Putative cysteine-rich receptor-like protein kinase 9 OS=Arabidopsis thaliana GN=CRK9 PE=5 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.283e-20
Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = -2
Query:  110 FRLSLWNVENSPSRSFDQF---VWNSMNEAVNQALSTTKMFATVKKNYTASQTLYSLVQCTPDLSRDDCSRCLRLAIS--PLDGCCSIKIGGRVMYPSCNFRYELYQFYNDTSNGT 442
            F LS  N  +      +QF   V ++MN+A  +A ++++ F+T+K   T  QTLY LVQCTPDL+  DC RCL  +I+  PL      +IG R  +PSCN RYELY FYN+T+ GT
Sbjct:  142 FILSNTNTISPNQSQINQFIVLVQSNMNQAAMEAANSSRKFSTIKTELTELQTLYGLVQCTPDLTSQDCLRCLTRSINRMPLS-----RIGARQFWPSCNSRYELYSFYNETTIGT 252          
BLAST of CX300408 vs. ExPASy Swiss-Prot
Match: CRK7_ARATH (Cysteine-rich receptor-like protein kinase 7 OS=Arabidopsis thaliana GN=CRK7 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.026e-18
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = -2
Query:  110 FDQFVWNSMNEAVNQALSTTKMFATVKKNYTASQTLYSLVQCTPDLSRDDCSRCLRLAISPLDGCCSIKIGGRVMYPSCNFRYELYQFYNDTSNGT 397
            F   V ++MN+   +A    + F+T+K   TA QT Y LVQCTPDLSR +C  CL  +I+ +      +IG R  +PSCN RYELY FYN+T+ GT
Sbjct:  160 FTNLVLSNMNQIAIEAADNPRKFSTIKTELTALQTFYGLVQCTPDLSRQNCMNCLTSSINRMP---FSRIGARQFWPSCNSRYELYDFYNETAIGT 252          
BLAST of CX300408 vs. ExPASy Swiss-Prot
Match: CRK5_ARATH (Cysteine-rich receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=CRK5 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.482e-17
Identity = 47/118 (39.83%), Postives = 72/118 (61.02%), Query Frame = -2
Query:  107 TSFRLSLWNVENSPSRSFDQF---VWNSMNEAVNQAL-STTKMFATVKKNYTASQTLYSLVQCTPDLSRDDCSRCLRLAISPLDGCCSIKIGGRVMYPSCNFRYELYQFYNDTSNGTL 448
            T+  +  WN +   +   D+F   V + M ++  +A  ST+K FA  K ++++SQ+LY+ VQC PDL+ +DC  CL+ +I  L      K+GGR + PSCN RYE+Y FY +T  GT+
Sbjct:  138 TTTTIITWNTQKVTADQSDRFNDAVLSLMKKSAEEAANSTSKKFAVKKSDFSSSQSLYASVQCIPDLTSEDCVMCLQQSIKEL---YFNKVGGRFLVPSCNSRYEVYPFYKETIEGTV 252          
BLAST of CX300408 vs. ExPASy Swiss-Prot
Match: CRK6_ARATH (Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.528e-17
Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = -2
Query:  119 FDQFVWNSMNEAVNQALSTTKMFATVKKNYTASQTLYSLVQCTPDLSRDDCSRCLRLAISPLDGCCSIKIGGRVMYPSCNFRYELYQFYNDTS 397
            F  FV ++M+EA  +A ++++   TV    TA Q LY L+QCTPDL+R DC  CL+   S ++G    +IG R+ +PSC  RYELY FYN+++
Sbjct:  161 FTSFVSSTMSEAAGKAANSSRKLYTVNTELTAYQNLYGLLQCTPDLTRADCLSCLQ---SSINGMALSRIGARLYWPSCTARYELYPFYNESA 250          
BLAST of CX300408 vs. ExPASy Swiss-Prot
Match: CRK4_ARATH (Cysteine-rich receptor-like protein kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.632e-17
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = -2
Query:  119 NVENSPSRSFDQF---VWNSMNEAVNQALSTTKMFATVKKNYTASQTLYSLVQCTPDLSRDDCSRCLRLAISPLDGCCSIKIGGRVMYPSCNFRYELYQFYNDTS 424
            N+ +S     D+F   V +++N A  +A +++K F T K      Q LY LVQCTPDL+R DC RCL+ +I    G    +IGGR  YPSCN RYE Y FYN+T+
Sbjct:  152 NISSSNQNQVDEFRDLVSSTLNLAAVEAANSSKKFYTRK--VITPQPLYLLVQCTPDLTRQDCLRCLQKSIK---GMSLYRIGGRFFYPSCNSRYENYSFYNETA 251          
BLAST of CX300408 vs. ExPASy Swiss-Prot
Match: CRK20_ARATH (Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 7.355e-17
Identity = 50/123 (40.65%), Postives = 69/123 (56.10%), Query Frame = -2
Query:  110 SFFSVLDTSFRLSLWNVENSPSRSFDQF---VWNSMNEAVNQALSTTKMFATVKKNYTASQTLYSLVQCTPDLSRDDCSRCLRLAISPLDGCCSIKIGGRVMYPSCNFRYELYQFYNDTSNGT 469
            +  S L+T   + + N  N  S   D+F   V N MN A  +A  + K FA  K +  A Q+LY +VQCTPDL+  DC  CL+ +I+ +      KIGGR   PSC  RY+ Y+FYN+ + GT
Sbjct:  130 NILSTLNTDGGVFMQNARNPISVKQDRFRDLVLNPMNLAAIEAARSIKRFAVTKFDLNALQSLYGMVQCTPDLTEQDCLDCLQQSINQV---TYDKIGGRTFLPSCTSRYDNYEFYNEFNVGT 249          
The following BLAST results are available for this feature:
BLAST of CX300408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CRK25_ARATH5.259e-2354.55Cysteine-rich receptor-like protein kinase 25 OS=A... [more]
CRK8_ARATH8.396e-2144.00Cysteine-rich receptor-like protein kinase 8 OS=Ar... [more]
CRK15_ARATH1.870e-2047.06Cysteine-rich receptor-like protein kinase 15 OS=A... [more]
CRK10_ARATH2.443e-2042.50Cysteine-rich receptor-like protein kinase 10 OS=A... [more]
CRK9_ARATH9.283e-2045.69Putative cysteine-rich receptor-like protein kinas... [more]
CRK7_ARATH1.026e-1846.88Cysteine-rich receptor-like protein kinase 7 OS=Ar... [more]
CRK5_ARATH1.482e-1739.83Cysteine-rich receptor-like protein kinase 5 OS=Ar... [more]
CRK6_ARATH2.528e-1745.16Cysteine-rich receptor-like protein kinase 6 OS=Ar... [more]
CRK4_ARATH5.632e-1745.71Cysteine-rich receptor-like protein kinase 4 OS=Ar... [more]
CRK20_ARATH7.355e-1740.65Putative cysteine-rich receptor-like protein kinas... [more]

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Properties
Property NameValue
Genbank descriptionC07009H08SK SaltLeaf1 Citrus clementina cDNA clone C07009H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300408 ID=CX300408; Name=CX300408; organism=Citrus clementina; type=EST; length=470bp
ATCAAATTTGATGTTAATTTCTAACGTGAAGAATGAAATTCGAAATTAGT
TTACCTTTAGAGCTTGTTACAGAACCAGGAGACGGCGGAGAAAAAAACAC
AGGCGGCAGTGTCCCGTTCGACGTATCATTATAAAACTGGTACAGCTCAT
ATCGGAAGTTGCAACTGGGATACATCACTCTTCCTCCTATCTTAATGCTA
CAGCATCCATCCAAGGGTGAAATAGCTAAACGAAGACATCTGCTACAGTC
ATCTCTAGACAAGTCCGGCGTGCACTGAACGAGGCTGTATAGCGTTTGAG
AGGCTGTATAATTTTTCTTTACCGTAGCAAACATTTTGGTGGTACTTAGA
GCCTGATTTACTGCTTCGTTCATCGAATTCCACACGAACTGGTCAAATGA
CCGACTTGGAGAATTTTCTACATTCCATAGGGAGAGTCTGAACGAGGTGT
CCAGGACTGAAAAGAAAGAA
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