CX300409

Overview
NameCX300409
Unique NameCX300409
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length262
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:970..1231. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300409 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.084e-21
Identity = 53/84 (63.10%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   10 LKGKLNGIALREPTPYXXXXXXXXXXSQKTFAQEVNAAFRESANNELKGILSVCHEPLVSADFRCFXXXXXXXXXXXXXMGDDM 261
            LKGKLNGIALR PTP           S+KTFA+EVNAAFRESA+NELKGILSVC EPLVS DFRC              MGDDM
Sbjct:  289 LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDM 372          
BLAST of CX300409 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 2.601e-19
Identity = 50/84 (59.52%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   10 LKGKLNGIALREPTPYXXXXXXXXXXSQKTFAQEVNAAFRESANNELKGILSVCHEPLVSADFRCFXXXXXXXXXXXXXMGDDM 261
            LKGKLNGIALR PTP           S+KTFA+EVNAAFR+SA  ELKGIL VC EPLVS DFRC              MGDDM
Sbjct:  284 LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDM 367          
BLAST of CX300409 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.793e-19
Identity = 49/84 (58.33%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   10 LKGKLNGIALREPTPYXXXXXXXXXXSQKTFAQEVNAAFRESANNELKGILSVCHEPLVSADFRCFXXXXXXXXXXXXXMGDDM 261
            LKGKLNGIALR PTP           S+KTFA+EVNAAFR++A  ELKGIL VC EPLVS DFRC              MGDDM
Sbjct:  121 LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDM 204          
BLAST of CX300409 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.875e-18
Identity = 49/84 (58.33%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   10 LKGKLNGIALREPTPYXXXXXXXXXXSQKTFAQEVNAAFRESANNELKGILSVCHEPLVSADFRCFXXXXXXXXXXXXXMGDDM 261
            LKGKLNGIALR PTP           S+KTFA+EVN AFRESA  EL GILSVC EPLVS DFRC              MGDD+
Sbjct:  293 LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDL 376          
BLAST of CX300409 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.208e-16
Identity = 46/84 (54.76%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   10 LKGKLNGIALREPTPYXXXXXXXXXXSQKTFAQEVNAAFRESANNELKGILSVCHEPLVSADFRCFXXXXXXXXXXXXXMGDDM 261
            LKGKLNGIALR PTP           S+KT A+EVN AFR++A NEL GIL VC  PLVS DFRC              MGDDM
Sbjct:  291 LKGKLNGIALRVPTPNVSVVDLVVQVSKKTLAEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDM 374          
BLAST of CX300409 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.830e-16
Identity = 44/85 (51.76%), Postives = 50/85 (58.82%), Query Frame = 1
Query:    7 ALKGKLNGIALREPTPYXXXXXXXXXXSQKTFAQEVNAAFRESANNELKGILSVCHEPLVSADFRCFXXXXXXXXXXXXXMGDDM 261
            AL+G    + LR PTP           S+KTFA+EVNAAFRE+A+ ELKGIL VC EPLVS DFRC              MGDDM
Sbjct:  279 ALRGSSMALPLRVPTPNVSVVDLVVQVSKKTFAEEVNAAFREAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDM 363          
BLAST of CX300409 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.830e-16
Identity = 44/85 (51.76%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    7 ALKGKLNGIALREPTPYXXXXXXXXXXSQKTFAQEVNAAFRESANNELKGILSVCHEPLVSADFRCFXXXXXXXXXXXXXMGDDM 261
            +LKGKLNGIALR PTP            +KTFA+EVNAAFRE+AN  +KG+L V   PLVS DF+C              MGDDM
Sbjct:  260 SLKGKLNGIALRVPTPTVSVVDLVVQVEKKTFAEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDM 344          
BLAST of CX300409 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.131e-14
Identity = 43/85 (50.59%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   10 LKGKLNGIALREPTPYXXXXXXXXXXSQKTF-AQEVNAAFRESANNELKGILSVCHEPLVSADFRCFXXXXXXXXXXXXXMGDDM 261
            LKGKLNGIALR PTP           ++K   A++VNAAFR++A+  LKG+L+VC EPLVS DFRC              MGDDM
Sbjct:  279 LKGKLNGIALRVPTPNVSVVDLVVNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDM 363          
BLAST of CX300409 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.290e-14
Identity = 41/84 (48.81%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   10 LKGKLNGIALREPTPYXXXXXXXXXXSQKTFAQEVNAAFRESANNELKGILSVCHEPLVSADFRCFXXXXXXXXXXXXXMGDDM 261
            LKGKLNGIALR PTP            +KTFA+E+N AF+E+A   L G+L+V  EPLVS DFRC              MG DM
Sbjct:  219 LKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEINNAFKEAAAGSLNGVLAVSDEPLVSVDFRCTDVSSTIDSSLTMVMGADM 302          
BLAST of CX300409 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.571e-14
Identity = 43/85 (50.59%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   10 LKGKLNGIALREPTPYXXXXXXXXXXSQKTF-AQEVNAAFRESANNELKGILSVCHEPLVSADFRCFXXXXXXXXXXXXXMGDDM 261
            LKGKLNGIALR PTP           ++K   A++VNAAFR++A   LKGIL VC  PLVS DFRC              MGDDM
Sbjct:  310 LKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDM 394          
The following BLAST results are available for this feature:
BLAST of CX300409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
G3PA_SPIOL8.084e-2163.10Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH2.601e-1959.52Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL5.793e-1958.33Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA2.875e-1858.33Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE1.208e-1654.76Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC7.830e-1651.76Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_CHLRE7.830e-1651.76Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_TOBAC1.131e-1450.59Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_SCEVA3.290e-1448.81Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_PEA9.571e-1450.59Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC07009H09SK SaltLeaf1 Citrus clementina cDNA clone C07009H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300409 ID=CX300409; Name=CX300409; organism=Citrus clementina; type=EST; length=262bp
CGAGGAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGAGCCAAC
ACCATACGTTTCGGTTGTTGATCTTGTCGTTCACGTGTCGCAGAAAACCT
TCGCACAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTAACAATGAACTG
AAAGGGATTCTCTCCGTGTGCCACGAGCCCCTCGTTTCGGCCGACTTCAG
GTGCTTTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTTATGG
GAGACGACATGG
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