CX300410

Overview
NameCX300410
Unique NameCX300410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length442
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300410 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.260e-34
Identity = 70/99 (70.71%), Postives = 77/99 (77.78%), Query Frame = 2
Query:    2 LKQTEVDWEFLKKCCETLTDENRRLHMELQELKALKLAQPLYMHMPAVTLTMCPSCERIGGGFADGN--------SKGPLPMGTKPHCYSPFTNPSAAC 274
            LKQTEVD EFLKKCCETLTDENRRL  ELQ+LKALKL+QP YMHMPA TLTMCPSCER+GGG   G+        +KG   + TKP  Y+PFTNPSAAC
Sbjct:  180 LKQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHMPAATLTMCPSCERLGGGGVGGDTTAVDEETAKGAFSIVTKPRFYNPFTNPSAAC 278          
BLAST of CX300410 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.282e-30
Identity = 67/108 (62.04%), Postives = 74/108 (68.52%), Query Frame = 2
Query:    2 LKQTEVDWEFLKKCCETLTDENRRLHMELQELKALKLAQPLYMHMPAVTLTMCPSCERIGGG----------------FADGN-SKGPLPMGTKPHCYSPFTNPSAAC 274
            LKQTEVD EFLKKCCETL DEN RL  E+QELK LKL QP YMHMPA TLT CPSCERIGGG                  DG+ +KG   + +KPH ++PFTNPSAAC
Sbjct:  167 LKQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMHMPASTLTKCPSCERIGGGGGGNGGGGGGSGATAVIVDGSTAKGAFSISSKPHFFNPFTNPSAAC 274          
BLAST of CX300410 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.418e-23
Identity = 52/90 (57.78%), Postives = 63/90 (70.00%), Query Frame = 2
Query:    2 LKQTEVDWEFLKKCCETLTDENRRLHMELQELKALKLAQPLYMHMPAVTLTMCPSCERIGGGFADGNSKGPLPMGTKPHCYSPFTNPSAA 271
            LKQTEVD E+LK+CCETLT+ENRRLH EL EL+ALK A+P YMH+PA TL+MCPSCER+    A  ++  P          SP   P+AA
Sbjct:  228 LKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHLPATTLSMCPSCERVASNPATASTSAPAA------ATSPAAAPTAA 311          
BLAST of CX300410 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 4.418e-23
Identity = 52/90 (57.78%), Postives = 63/90 (70.00%), Query Frame = 2
Query:    2 LKQTEVDWEFLKKCCETLTDENRRLHMELQELKALKLAQPLYMHMPAVTLTMCPSCERIGGGFADGNSKGPLPMGTKPHCYSPFTNPSAA 271
            LKQTEVD E+LK+CCETLT+ENRRLH EL EL+ALK A+P YMH+PA TL+MCPSCER+    A  ++  P          SP   P+AA
Sbjct:  228 LKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHLPATTLSMCPSCERVASNPATASTSAPAA------ATSPAAAPTAA 311          
BLAST of CX300410 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.285e-22
Identity = 61/114 (53.51%), Postives = 70/114 (61.40%), Query Frame = 2
Query:    2 LKQTEVDWEFLKKCCETLTDENRRLHMELQELKALKLA----------------QPLYMHMPAVTLTMCPSCERIGGG-------FADGNSKGPLPMGTKPHCYSPFTNPSAAC 274
            LKQTEVD EFLK+CCETLT+ENRRL  ELQEL+ALK A                 P YM +PA TLT+CPSCER+GG         ADG   GP    T  H ++PFT+ SAAC
Sbjct:  181 LKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERVGGPASAAKVVAADGTKAGP-GRTTTHHFFNPFTH-SAAC 292          
BLAST of CX300410 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.285e-22
Identity = 61/114 (53.51%), Postives = 70/114 (61.40%), Query Frame = 2
Query:    2 LKQTEVDWEFLKKCCETLTDENRRLHMELQELKALKLA----------------QPLYMHMPAVTLTMCPSCERIGGG-------FADGNSKGPLPMGTKPHCYSPFTNPSAAC 274
            LKQTEVD EFLK+CCETLT+ENRRL  ELQEL+ALK A                 P YM +PA TLT+CPSCER+GG         ADG   GP    T  H ++PFT+ SAAC
Sbjct:  181 LKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERVGGPASAAKVVAADGTKAGP-GRTTTHHFFNPFTH-SAAC 292          
BLAST of CX300410 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.401e-21
Identity = 48/90 (53.33%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 LKQTEVDWEFLKKCCETLTDENRRLHMELQELKALKLAQPLYMHMPAVTLTMCPSCERIGGGFADGNSKGPLPMGTKPHCYSPFTNPSAA 271
            LKQTEVD E+LK+CCETLT+ENRRL  EL EL+ALK   P YMH+PA TL+MCPSCER+    A   +       T     +P +   AA
Sbjct:  231 LKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAA 320          
BLAST of CX300410 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.401e-21
Identity = 48/90 (53.33%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 LKQTEVDWEFLKKCCETLTDENRRLHMELQELKALKLAQPLYMHMPAVTLTMCPSCERIGGGFADGNSKGPLPMGTKPHCYSPFTNPSAA 271
            LKQTEVD E+LK+CCETLT+ENRRL  EL EL+ALK   P YMH+PA TL+MCPSCER+    A   +       T     +P +   AA
Sbjct:  144 LKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAA 233          
BLAST of CX300410 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.870e-19
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 2
Query:    2 LKQTEVDWEFLKKCCETLTDENRRLHMELQELKALKLAQPLYMHM-PAVTLTMCPSCERIGGGFADGNSKGPLPMGTKP 235
            LKQTEVD E+LK+CCE LTDENRRL  E+ EL+ALKL+  LYMHM P  TLTMCPSCER+    +  +   P+   + P
Sbjct:  216 LKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSPHLYMHMKPPTTLTMCPSCERVAVTSSSSSVAPPVMNSSSP 294          
BLAST of CX300410 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 6.602e-19
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 2
Query:    2 LKQTEVDWEFLKKCCETLTDENRRLHMELQELKALKLAQPLYMHMPAVTLTMCPSCERI 178
            LKQTEVD E+LK+CCE+LT+ENRRL  E++EL+ LK + P YM +PA TLTMCPSCER+
Sbjct:  244 LKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQLPATTLTMCPSCERV 302          
The following BLAST results are available for this feature:
BLAST of CX300410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
HAT22_ARATH4.260e-3470.71Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HAT9_ARATH1.282e-3062.04Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HOX27_ORYSJ4.418e-2357.78Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI4.418e-2357.78Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX19_ORYSJ1.285e-2253.51Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI1.285e-2253.51Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX11_ORYSJ5.401e-2153.33Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI5.401e-2153.33Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HAT3_ARATH3.870e-1958.23Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
HAT14_ARATH6.602e-1967.80Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07009H10SK SaltLeaf1 Citrus clementina cDNA clone C07009H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300410 ID=CX300410; Name=CX300410; organism=Citrus clementina; type=EST; length=442bp
GCTCAAGCAAACAGAAGTGGACTGGGAATTCTTGAAGAAATGCTGTGAAA
CACTAACTGATGAAAACAGAAGGCTGCATATGGAGCTACAAGAACTCAAA
GCTCTGAAGCTAGCTCAGCCTCTTTACATGCATATGCCGGCAGTTACCCT
GACGATGTGCCCTTCTTGCGAACGGATCGGCGGCGGCTTCGCCGATGGAA
ACTCGAAGGGCCCGCTTCCCATGGGTACTAAGCCTCACTGTTATAGTCCC
TTCACCAATCCTTCAGCAGCTTGTTGATTGAGTTGGTAGATACGATGAGG
AAAAGAAAATCAGATTAAATGTGATTATAAAAATTATATGGAACACTGCA
ACAAACCCAGTTATTTTTTTTGGGTCAGGGCTTGCAGTGATCAGAGATAT
TAGTGGGATTAATTAAACTGTAGAAATTATTACTAGATGCTA
back to top