CX300415

Overview
NameCX300415
Unique NameCX300415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11442 contig Ccv1_Contig11442:415..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300415 vs. ExPASy Swiss-Prot
Match: PPD_RAPSA (Pheophorbidase OS=Raphanus sativus GN=PPD PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.015e-15
Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 2
Query:   50 KVILVGHSIGGLNLTDAINRFGYGKIHTAVYVAADMSDRRTEDVKVLFPASINQGAAQNGISPDMFELEYALGPDKFPTSIMVKKEYQRELYYHMSPVEDSTLASMVLKPAPARVFACA 406
            K++LVGHSIGG ++T+A+ +F   KI   VY+AADM       V+    +S +      G   D++E  Y  G DK PT +++K+E++R  YY  SP+ED +LAS +L+PAP R    A
Sbjct:   81 KIVLVGHSIGGGSVTEALCKFT-DKISMVVYLAADM-------VQPGSTSSTHDSIMTVG-EEDIWEYIYGEGADKPPTGVLMKEEFRRHYYYSQSPLEDVSLASKLLRPAPVRALGGA 190          
BLAST of CX300415 vs. ExPASy Swiss-Prot
Match: PPD_ARATH (Probable pheophorbidase OS=Arabidopsis thaliana GN=PPD PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.015e-15
Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 2
Query:   50 KVILVGHSIGGLNLTDAINRFGYGKIHTAVYVAADMSDRRTEDVKVLFPASINQGAAQNGI--SPDMFELEYALGPDKFPTSIMVKKEYQRELYYHMSPVEDSTLASMVLKPAPARVF 397
            KVILVGHSIGG ++T+A+ +F   KI  A+Y+AA M            P SI      N      D++E  Y  G DK PT +++K E+ R  YY  SP+ED TL+S +L+PAP R F
Sbjct:   80 KVILVGHSIGGGSVTEALCKFT-DKISMAIYLAASMVQ----------PGSIPSPHLSNIHVGEEDIWEYTYGEGTDKPPTGVLMKPEFIRHYYYSQSPLEDVTLSSKLLRPAPMRAF 186          
BLAST of CX300415 vs. ExPASy Swiss-Prot
Match: Y1399_ARATH (Probable esterase At1g33990 OS=Arabidopsis thaliana GN=At1g33990 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 2
Query:   47 EKVILVGHSIGGLNLTDAINRFGYGKIHTAVYVAADMSDRRTEDVKVLFPASINQGAAQNGISPDMFELEYALGPDKFPTSIMVKKEYQRELYYHMSPVEDSTLASMVLKPAP 385
            EKVILVGHS GG +++ A+ RF   KI  A++V A M         V    S   G+A+  +    F L Y  G DK PT  M +K + + LY++ SP +D  LA + ++P P
Sbjct:  164 EKVILVGHSTGGASISYALERFPE-KISKAIFVCATMVSDGQRPFDVF---SEELGSAERFMKESQF-LIYGNGKDKPPTGFMFEKPHMKGLYFNQSPNKDIALAMISMRPVP 271          
The following BLAST results are available for this feature:
BLAST of CX300415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PPD_RAPSA1.015e-1541.18Pheophorbidase OS=Raphanus sativus GN=PPD PE=1 SV=... [more]
PPD_ARATH1.015e-1543.22Probable pheophorbidase OS=Arabidopsis thaliana GN... [more]
Y1399_ARATH5.764e-1138.05Probable esterase At1g33990 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC07010A04SK SaltLeaf1 Citrus clementina cDNA clone C07010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300415 ID=CX300415; Name=CX300415; organism=Citrus clementina; type=EST; length=411bp
ATACAATAAGCCCCTCATCAACCTCTTGCATAACTTGCCACATAATGAAA
AGGTGATATTGGTCGGACACAGCATAGGAGGTCTGAACTTGACGGACGCC
ATTAATAGATTTGGTTATGGCAAAATTCATACGGCTGTTTACGTTGCGGC
TGACATGTCGGATAGACGTACTGAAGACGTAAAGGTTCTTTTCCCTGCAA
GCATCAACCAGGGTGCAGCGCAAAACGGGATATCTCCGGACATGTTCGAA
CTAGAGTATGCGTTGGGTCCTGATAAATTTCCAACAAGCATCATGGTGAA
AAAGGAATATCAACGAGAACTTTACTATCATATGAGTCCTGTGGAGGACT
CGACTTTGGCCTCGATGGTTTTAAAACCTGCACCTGCGAGGGTCTTTGCA
TGTGCTCCGTT
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