CX300422

Overview
NameCX300422
Unique NameCX300422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.905e-31
Identity = 64/112 (57.14%), Postives = 84/112 (75.00%), Query Frame = 2
Query:   95 SVTDLVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTDFCYIEEKNKADPHC--TSPQYPCANGKFYYGRGPIQLTGNGNY 412
            +V ++VT  FF+GIKNQA + CEGK FYTR AF++A+N+YP F    T    KRE+AAFFAHVTHET  FCYI E NK++ +C  ++ Q+PCA G+ YYGRGP+Q++ N NY
Sbjct:   79 NVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY 190          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.478e-30
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 2
Query:   95 SVTDLVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEF----GRTDTKREVAAFFAHVTHETTDFCYIEEKNKADPHC--TSPQYPCANGKFYYGRGPIQLTGNGNY 412
            +V  +VT  FF+GIKNQA + CEGK FYTR AF++A+  YP F     +   KRE+AAFFAH THET  FCYI E NK++ +C  T  Q+PCA G+ YYGRGP+Q++ N NY
Sbjct:   68 NVASVVTSSFFNGIKNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY 179          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.478e-30
Identity = 67/115 (58.26%), Postives = 76/115 (66.09%), Query Frame = 2
Query:   95 SVTDLVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEFGRT----DTKREVAAFFAHVTHETTDFCYIEE-----KNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412
            SV  +VTPEFF  +  QA   C  KGFYTRDAF+TA   YP FGRT    D+KRE+AAFFAH  HET  FCYIEE     KN  D   TS Q+PC  GK YYGRGP+Q++ N NY
Sbjct:   67 SVASIVTPEFFAALVAQADDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIKFCYIEEIDGPSKNYCDE--TSTQWPCMAGKGYYGRGPLQISWNFNY 179          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 6.056e-29
Identity = 63/109 (57.80%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   95 SVTDLVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDTKREVAAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNY 412
            SV  +VT  FF+GI NQA   C GK FYTRD+FI A N++P F  + T+RE+A  FAH THET  FCYIEE N A   +C   + QYPCA GK Y+GRGPIQL+ N NY
Sbjct:   71 SVGSIVTQAFFNGIINQAGGGCAGKNFYTRDSFINAANTFPNFANSVTRREIATMFAHFTHETGHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNY 179          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.910e-29
Identity = 63/114 (55.26%), Postives = 82/114 (71.93%), Query Frame = 2
Query:   95 SVTDLVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEFGR----TDTKREVAAFFAHVTHETTDFCYIEEKN-KADPHC-TSPQYPCANGKFYYGRGPIQLTGNGNYIE 418
            +V+D+VT EF+DGI +QA A C GK FYTR  F+ A+++YP FG      D KRE+AA+FAHVTHET   CYIEE++  A+ +C  S QYPC   K Y+GRGP+QL+ N NYI+
Sbjct:   45 TVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYID 158          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.762e-28
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 2
Query:   71 PGNVVCQNSVTDLVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEFGR----TDTKREVAAFFAHVTHETTDFCYIEEK--NKADPHC---TSPQYPCANGKFYYGRGPIQLTGNGNY 412
            PG     +SV+D+V+  FFDGI  QA A+C GK FYTR AF++A++  P+FG      D KRE+AAFFAH++HETT+ C+IEE+  +  D +C    + QYPCA GK YYGRGP+QL+ N NY
Sbjct:   78 PGTGGGGSSVSDIVSQAFFDGIIGQAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNY 198          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.696e-28
Identity = 63/115 (54.78%), Postives = 81/115 (70.43%), Query Frame = 2
Query:   92 NSVTDLVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEFGRT----DTKREVAAFFAHVTHETTDFCYIEEKNKAD-PHC---TSPQYPCANGKFYYGRGPIQLTGNGNY 412
            N   D++T +F +GI +QA + C GK FYTRDAF++ALNSY +FGR     D+KRE+AA FAH THET  FCYIEE + A   +C   +  QYPC++ K Y+GRGPIQL+ N NY
Sbjct:   66 NVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY 180          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.745e-28
Identity = 63/113 (55.75%), Postives = 76/113 (67.26%), Query Frame = 2
Query:   95 SVTDLVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEFGR----TDTKREVAAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNY 412
            SV  +VT  FF+GIKNQAP  C GK FYTR +F+ A +SY  F R     D+KRE+AAFFAHVTHET   CYI E N A   +C   + Q+PC  GK YYGRGP+Q++ N NY
Sbjct:   86 SVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY 198          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.544e-27
Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 2
Query:   95 SVTDLVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEFG----RTDTKREVAAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNY 412
            SV  +VT  FF+GIKNQAP  C GK FYTR +F+ A  SY  F       D+KRE+AAFFAHVTHET   CYI E N A+  +C  ++ Q+PC  GK YYGRGP+Q++ N NY
Sbjct:   83 SVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY 195          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.928e-21
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 2
Query:   98 VTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            +  +++   FD  +K++    C  KGFYT DAF+ A  S+P FG T +    KRE+AAF    +HETT              +C+++E+N +  +C  SP+YPCA GK YYGRGP+QL+ N NY
Sbjct:    2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNY 125          
The following BLAST results are available for this feature:
BLAST of CX300422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CHIA_MAIZE2.905e-3157.14Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_MAIZE5.478e-3055.36Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI6_ORYSJ5.478e-3058.26Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA6.056e-2957.80Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIT_DIOJA7.910e-2955.26Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHIP_BETVU1.762e-2852.85Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_PHAVU6.696e-2854.78Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI5_ORYSJ8.745e-2855.75Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ2.544e-2754.87Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_CARPA7.928e-2141.13Endochitinase OS=Carica papaya PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07010A11SK SaltLeaf1 Citrus clementina cDNA clone C07010A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300422 ID=CX300422; Name=CX300422; organism=Citrus clementina; type=EST; length=418bp
AAAACATTTCTCCAAAATGGCCCTGCTTAATGTTTTCCTGGGGTTATTTC
TACTTGCTTTAACCAATATTCCCGGAAACGTAGTGTGTCAAAACTCCGTT
ACCGATCTCGTGACGCCGGAATTTTTTGACGGGATTAAGAATCAGGCTCC
AGCAACTTGCGAAGGGAAAGGGTTCTATACAAGAGATGCATTTATTACTG
CTCTCAATTCGTATCCTGAATTTGGCAGAACTGATACTAAGCGTGAAGTT
GCAGCATTTTTTGCCCATGTCACTCATGAAACAACAGATTTTTGCTACAT
AGAAGAGAAGAATAAAGCAGATCCTCATTGTACATCTCCACAATACCCAT
GTGCCAATGGTAAATTCTACTACGGCCGGGGACCGATTCAGCTCACCGGA
AATGGAAACTACATAGAG
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