CX300423

Overview
NameCX300423
Unique NameCX300423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig828 contig Ccv1_Contig828:62..524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.037e-68
Identity = 128/154 (83.12%), Postives = 146/154 (94.81%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSE 463
            DVLSFVEKA EVM+QEDAE++QKKIMSA FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEERE+PELLAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+PALS LEDALK+E
Sbjct:  374 DVLSFVEKATEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLEDALKAE 527          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 9.171e-33
Identity = 70/140 (50.00%), Postives = 97/140 (69.29%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL-MGVMEGG 418
            DVL+ VEKAQE +   D E++Q KI+ A FDF+DF+KQ R +  MGS+  ++ MIPGM K++   + + EK LK  EAMI +MT EER+ P+LLA+SP RR+R+AQ SG +E  VS+L+    +MR  M+ + MG M GG
Sbjct:  298 DVLTLVEKAQEAIDVGDVEKLQNKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSSGDIEKGEKELKRTEAMISSMTTEERKNPDLLAKSPSRRRRIAQGSGHSETDVSKLITNFTKMRTMMQQMGMGGMPGG 437          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.764e-32
Identity = 70/148 (47.30%), Postives = 99/148 (66.89%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNL 442
            DVL+ VEKAQE +   D E+MQ+KI++A FDF DFLKQ R +  MGS++  I +IPG+G KI   Q+R+ E+ LK +EAMI +MTP+ER  P+LL+ SP RR R+A+  G+TE ++ Q++ Q  QMR  M+     M  G  P +  +
Sbjct:  298 DVLTLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKINDEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQIIQQFQQMRTMMQQ----MSQGGFPGMGGM 441          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_RICCN (Signal recognition particle protein OS=Rickettsia conorii GN=ffh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.053e-21
Identity = 53/135 (39.26%), Postives = 89/135 (65.93%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 397
            D++SFVEKA  ++ +E+AE+   K+    FD ND+L+Q R++ +MG    ++ M+PG GKI   Q+ +++ + KI+   EA+I +MTP+ER+ P+++  S  RRKR+A  +G T Q+V+ L+ Q  Q+   MK +
Sbjct:  300 DIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKERKNPDIINAS--RRKRIAVGAGTTVQKVNILLKQYKQISEIMKKV 431          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.052e-20
Identity = 54/154 (35.06%), Postives = 88/154 (57.14%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSE 463
            DVLS +E+A++V   E AE    KI++      DFL+Q   V +MG +  ++GM+PG G++     +  +K L  ++A+I  MTP+ER  P+++  S  RR R+A  SG T  +V+QLV + F+ R  M +++G   G  +P +       KS+
Sbjct:  305 DVLSLIEQAEQVFDAEQAEAAAAKIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLPGAGQVKEVLEQVDDKQLDRLQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVDRFFEARKMMSSVLG---GMGIPGMGRKSATRKSK 453          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_MYCTU (Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.794e-20
Identity = 54/154 (35.06%), Postives = 87/154 (56.49%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSE 463
            DVLS +E+A++V   + AEE   KI +      DFL+Q   V +MG +  ++GM+PG  ++  A     +K L  ++A+I  MTP+ER  P+++  S  RR R+A  SG T  +V+QLV + F+ R  M +++G   G  +P +       KS+
Sbjct:  305 DVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLG---GMGIPGIGRKSATRKSK 453          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.794e-20
Identity = 54/154 (35.06%), Postives = 87/154 (56.49%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSE 463
            DVLS +E+A++V   + AEE   KI +      DFL+Q   V +MG +  ++GM+PG  ++  A     +K L  ++A+I  MTP+ER  P+++  S  RR R+A  SG T  +V+QLV + F+ R  M +++G   G  +P +       KS+
Sbjct:  305 DVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLG---GMGIPGIGRKSATRKSK 453          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_RICFE (Signal recognition particle protein OS=Rickettsia felis GN=ffh PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.343e-20
Identity = 53/133 (39.85%), Postives = 87/133 (65.41%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 391
            D++SFVEKA  ++ +E+AE+   K+    FD ND+L+Q R++ +MG    ++ M+PG GKI   Q+ +++ + KI+   EA+I +MT +ERE P+++  S  RRKR+A  +G T Q+V+ L+ Q  Q+   MK
Sbjct:  300 DIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTLKERENPDIINAS--RRKRIAAGAGTTVQKVNILLKQYKQISEMMK 429          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_BACSU (Signal recognition particle protein OS=Bacillus subtilis GN=ffh PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.220e-20
Identity = 50/139 (35.97%), Postives = 93/139 (66.91%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 415
            DVL+ +EKAQ  + ++ A+E+++K+ + +F  +DFL+Q   V  MG +  ++ M+PG GK+   + ++  EK L  +EA+I++MT  E+E+P+++  S  RRKR+A+ SG + Q+V++L+ Q  +M+  MK +  + +G
Sbjct:  300 DVLTLIEKAQASVDEDKAKELEQKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINAS--RRKRIAKGSGTSVQEVNRLLKQFDEMKKMMKQMTNMSKG 436          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_AQUAE (Signal recognition particle protein OS=Aquifex aeolicus GN=ffh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.220e-20
Identity = 52/147 (35.37%), Postives = 89/147 (60.54%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNL 442
            D+ S VEKAQEV+ ++ A+ M  K+M+  FD  D  +  R + +MG + +++ MIPG+       ++  EK  K +EA+I +MTPEER  P+++  S  R+KR+A+ SG T   V++L+ +  +M+  M+ L    + G +PA+  +
Sbjct:  293 DIQSLVEKAQEVITEDKAQVMATKVMTGEFDLEDLREMLRMIQQMGPLDKLLSMIPGVAP-QLKHLKVDEKQFKKIEAIINSMTPEERRNPKIINMS--RKKRIARGSGTTVSDVNKLLKRYEEMKKMMRKL---QKAGGMPAIPKM 433          
The following BLAST results are available for this feature:
BLAST of CX300423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
SR54C_ARATH1.037e-6883.12Signal recognition particle 54 kDa protein, chloro... [more]
SRP54_SYNY39.171e-3350.00Signal recognition particle protein OS=Synechocyst... [more]
SRP54_SYNE77.764e-3247.30Signal sequence-binding protein OS=Synechococcus e... [more]
SRP54_RICCN8.053e-2139.26Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_MYCLE1.052e-2035.06Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_MYCTU1.794e-2035.06Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_MYCBO1.794e-2035.06Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_RICFE2.343e-2039.85Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_BACSU5.220e-2035.97Signal recognition particle protein OS=Bacillus su... [more]
SRP54_AQUAE5.220e-2035.37Signal recognition particle protein OS=Aquifex aeo... [more]

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Properties
Property NameValue
Genbank descriptionC07010A12SK SaltLeaf1 Citrus clementina cDNA clone C07010A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300423 ID=CX300423; Name=CX300423; organism=Citrus clementina; type=EST; length=463bp
AGATGTTCTCTCATTTGTAGAGAAGGCACAAGAAGTTATGCAACAAGAAG
ATGCTGAAGAAATGCAAAAGAAGATAATGAGTGCGAATTTTGACTTCAAT
GATTTCTTAAAGCAAACCCGTACTGTTGCACGTATGGGTTCGATGAGTCG
TGTTATAGGAATGATCCCTGGAATGGGGAAGATTACTCCTGCACAAGTTC
GAGAAGCAGAGAAGAGTTTAAAAATAATGGAAGCAATGATCGAAGCAATG
ACGCCTGAGGAAAGGGAGAAACCAGAACTGTTGGCTGAATCTCCTGTCAG
AAGAAAAAGAGTTGCTCAAGATTCTGGGAAAACAGAACAGCAGGTGAGCC
AACTTGTTGCTCAACTCTTCCAAATGCGTGTGCGTATGAAGAACTTAATG
GGTGTAATGGAAGGTGGTTCACTTCCTGCACTGAGCAATCTTGAGGATGC
CCTTAAATCTGAA
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