CX300423
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 1.037e-68 Identity = 128/154 (83.12%), Postives = 146/154 (94.81%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSE 463 DVLSFVEKA EVM+QEDAE++QKKIMSA FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEERE+PELLAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+PALS LEDALK+E Sbjct: 374 DVLSFVEKATEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLEDALKAE 527
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 9.171e-33 Identity = 70/140 (50.00%), Postives = 97/140 (69.29%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL-MGVMEGG 418 DVL+ VEKAQE + D E++Q KI+ A FDF+DF+KQ R + MGS+ ++ MIPGM K++ + + EK LK EAMI +MT EER+ P+LLA+SP RR+R+AQ SG +E VS+L+ +MR M+ + MG M GG Sbjct: 298 DVLTLVEKAQEAIDVGDVEKLQNKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSSGDIEKGEKELKRTEAMISSMTTEERKNPDLLAKSPSRRRRIAQGSGHSETDVSKLITNFTKMRTMMQQMGMGGMPGG 437
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 7.764e-32 Identity = 70/148 (47.30%), Postives = 99/148 (66.89%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNL 442 DVL+ VEKAQE + D E+MQ+KI++A FDF DFLKQ R + MGS++ I +IPG+G KI Q+R+ E+ LK +EAMI +MTP+ER P+LL+ SP RR R+A+ G+TE ++ Q++ Q QMR M+ M G P + + Sbjct: 298 DVLTLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKINDEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQIIQQFQQMRTMMQQ----MSQGGFPGMGGM 441
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_RICCN (Signal recognition particle protein OS=Rickettsia conorii GN=ffh PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 8.053e-21 Identity = 53/135 (39.26%), Postives = 89/135 (65.93%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 397 D++SFVEKA ++ +E+AE+ K+ FD ND+L+Q R++ +MG ++ M+PG GKI Q+ +++ + KI+ EA+I +MTP+ER+ P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK + Sbjct: 300 DIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKERKNPDIINAS--RRKRIAVGAGTTVQKVNILLKQYKQISEIMKKV 431
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.052e-20 Identity = 54/154 (35.06%), Postives = 88/154 (57.14%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSE 463 DVLS +E+A++V E AE KI++ DFL+Q V +MG + ++GM+PG G++ + +K L ++A+I MTP+ER P+++ S RR R+A SG T +V+QLV + F+ R M +++G G +P + KS+ Sbjct: 305 DVLSLIEQAEQVFDAEQAEAAAAKIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLPGAGQVKEVLEQVDDKQLDRLQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVDRFFEARKMMSSVLG---GMGIPGMGRKSATRKSK 453
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_MYCTU (Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.794e-20 Identity = 54/154 (35.06%), Postives = 87/154 (56.49%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSE 463 DVLS +E+A++V + AEE KI + DFL+Q V +MG + ++GM+PG ++ A +K L ++A+I MTP+ER P+++ S RR R+A SG T +V+QLV + F+ R M +++G G +P + KS+ Sbjct: 305 DVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLG---GMGIPGIGRKSATRKSK 453
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.794e-20 Identity = 54/154 (35.06%), Postives = 87/154 (56.49%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSE 463 DVLS +E+A++V + AEE KI + DFL+Q V +MG + ++GM+PG ++ A +K L ++A+I MTP+ER P+++ S RR R+A SG T +V+QLV + F+ R M +++G G +P + KS+ Sbjct: 305 DVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLG---GMGIPGIGRKSATRKSK 453
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_RICFE (Signal recognition particle protein OS=Rickettsia felis GN=ffh PE=3 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 2.343e-20 Identity = 53/133 (39.85%), Postives = 87/133 (65.41%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 391 D++SFVEKA ++ +E+AE+ K+ FD ND+L+Q R++ +MG ++ M+PG GKI Q+ +++ + KI+ EA+I +MT +ERE P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK Sbjct: 300 DIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTLKERENPDIINAS--RRKRIAAGAGTTVQKVNILLKQYKQISEMMK 429
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_BACSU (Signal recognition particle protein OS=Bacillus subtilis GN=ffh PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 5.220e-20 Identity = 50/139 (35.97%), Postives = 93/139 (66.91%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 415 DVL+ +EKAQ + ++ A+E+++K+ + +F +DFL+Q V MG + ++ M+PG GK+ + ++ EK L +EA+I++MT E+E+P+++ S RRKR+A+ SG + Q+V++L+ Q +M+ MK + + +G Sbjct: 300 DVLTLIEKAQASVDEDKAKELEQKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINAS--RRKRIAKGSGTSVQEVNRLLKQFDEMKKMMKQMTNMSKG 436
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_AQUAE (Signal recognition particle protein OS=Aquifex aeolicus GN=ffh PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 5.220e-20 Identity = 52/147 (35.37%), Postives = 89/147 (60.54%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNL 442 D+ S VEKAQEV+ ++ A+ M K+M+ FD D + R + +MG + +++ MIPG+ ++ EK K +EA+I +MTPEER P+++ S R+KR+A+ SG T V++L+ + +M+ M+ L + G +PA+ + Sbjct: 293 DIQSLVEKAQEVITEDKAQVMATKVMTGEFDLEDLREMLRMIQQMGPLDKLLSMIPGVAP-QLKHLKVDEKQFKKIEAIINSMTPEERRNPKIINMS--RKKRIARGSGTTVSDVNKLLKRYEEMKKMMRKL---QKAGGMPAIPKM 433 The following BLAST results are available for this feature:
BLAST of CX300423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300423 ID=CX300423; Name=CX300423; organism=Citrus clementina; type=EST; length=463bpback to top |