CX300426

Overview
NameCX300426
Unique NameCX300426
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300426_ssr64 microsatellite CX300426_ssr64:64..81. BLAST: Citrus ESTs to Prunus persica proteins V1
CX300426_ssr80 microsatellite CX300426_ssr80:80..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300426 vs. ExPASy Swiss-Prot
Match: PGR5_ARATH (Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana GN=PGR5 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.058e-28
Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = 2 
Query:  113 MAATSVCVAG-----LSSSFHGSWGASFANGGEEYR-MLARSVPNVRVAR----PIRMQPMMGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADA 424
            MAA S+   G     + +SF+G WG+S +  GE+Y+ ML+++V   + AR     IR  PMM N+NEGKG+FAP+VV+TRN++GKKRFNQ RGKAIALHSQVITEFCKSIGADA
Sbjct:    1 MAAASISAIGCNQTLIGTSFYGGWGSSIS--GEDYQTMLSKTVAPPQQARVSRKAIRAVPMMKNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADA 112
The following BLAST results are available for this feature:
BLAST of CX300426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGR5_ARATH1.058e-2859.65Protein PROTON GRADIENT REGULATION 5, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionC07010B03SK SaltLeaf1 Citrus clementina cDNA clone C07010B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300426 ID=CX300426; Name=CX300426; organism=Citrus clementina; type=EST; length=426bp
CCCAGAAACCACAAACAAGCTAGCAAACCCTCTGAGCCTCCTTCACTGAA
AGCACAAGCTATTTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGCGTGTTG
AGCGTTTCAATTATGGCTGCTACATCAGTGTGTGTAGCTGGGTTATCATC
TTCGTTTCATGGAAGCTGGGGAGCTTCGTTTGCTAATGGTGGTGAAGAAT
ACAGGATGTTGGCAAGATCAGTGCCGAATGTTAGAGTGGCAAGACCCATT
AGAATGCAACCGATGATGGGGAACATTAATGAAGGCAAAGGCATTTTTGC
TCCTGTTGTTGTTCTCACTCGTAATATCATTGGCAAGAAGAGGTTCAATC
AGTTTAGAGGCAAAGCTATTGCCTTGCATTCTCAGGTAATTACTGAATTC
TGCAAATCAATAGGAGCTGATGCAAA
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