CX300431

Overview
NameCX300431
Unique NameCX300431
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9449 contig Ccv1_Contig9449:374..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300431 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 2.485e-64
Identity = 124/150 (82.67%), Postives = 130/150 (86.67%), Query Frame = 3
Query:    3 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 452
            G GFTKQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALGDRGKFVD+P  PTGL  AVIPPGKS +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+
Sbjct:   92 GIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGV 241          

HSP 2 Score: 78.9518 bits (193), Expect = 1.059e-14
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    6 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 242
            FGFTK NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKF+ + +E
Sbjct:  199 FGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275          

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 3
Query:  264 VIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 452
            V PP +  +   G+       GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGI
Sbjct:   73 VAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGI 135          
BLAST of CX300431 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 7.994e-63
Identity = 121/150 (80.67%), Postives = 129/150 (86.00%), Query Frame = 3
Query:    3 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 452
            G GFTKQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALGDRG+F+D+P   TGL  AVIPPGKS +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+
Sbjct:   92 GIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGV 241          

HSP 2 Score: 78.9518 bits (193), Expect = 1.059e-14
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    6 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 242
            FGFTK NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKF+ + +E
Sbjct:  199 FGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275          

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 3
Query:  264 VIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 452
            V PP +  +   G+       GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGI
Sbjct:   73 VAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGI 135          
BLAST of CX300431 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 1.044e-62
Identity = 125/150 (83.33%), Postives = 131/150 (87.33%), Query Frame = 3
Query:    3 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 452
            G GFTK NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP           GAIGALGDRGKFVD+P  PTGL  AVIPPGK++RSALGLKE GP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI
Sbjct:   82 GIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 229          

HSP 2 Score: 79.337 bits (194), Expect = 8.106e-15
Identity = 43/79 (54.43%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    6 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 242
            FGFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP            AI      GKF+ +  E
Sbjct:  187 FGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINP--GNGKFITDDGE 263          
BLAST of CX300431 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 6.768e-62
Identity = 120/150 (80.00%), Postives = 127/150 (84.67%), Query Frame = 3
Query:    3 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 452
            G GFTKQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGAL DRGKF+D+P  PTGL  AVIPPGK  +SALGL EGGP+F FTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+
Sbjct:   90 GIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGV 239          

HSP 2 Score: 76.2554 bits (186), Expect = 6.862e-14
Identity = 42/79 (53.16%), Postives = 49/79 (62.03%), Query Frame = 3
Query:    6 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 242
            F FTK NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKFV + +E
Sbjct:  197 FEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINP--GTGKFVTDEEE 273          
BLAST of CX300431 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.154e-61
Identity = 123/150 (82.00%), Postives = 129/150 (86.00%), Query Frame = 3
Query:    3 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 452
            G GFTK+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP           GAIGALGDRG+FVDEP   TGL  AVIPPGK +RSALGLK  GP+FGFTKSNELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+
Sbjct:   91 GIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--TTGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 238          

HSP 2 Score: 83.1889 bits (204), Expect = 5.614e-16
Identity = 44/79 (55.70%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    6 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 242
            FGFTK NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP            AI      GKF+ + +E
Sbjct:  196 FGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINP--GTGKFITDDEE 272          
The following BLAST results are available for this feature:
BLAST of CX300431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_SOLLC2.485e-6482.67Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SOLSG7.994e-6380.67Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_ARATH1.044e-6283.33Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
PSBS_TOBAC6.768e-6280.00Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SPIOL1.154e-6182.00Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
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Properties
Property NameValue
Genbank descriptionC07010B08SK SaltLeaf1 Citrus clementina cDNA clone C07010B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300431 ID=CX300431; Name=CX300431; organism=Citrus clementina; type=EST; length=453bp
GAGGATTTGGTTTTACAAAGCAAAATGAGCTCTTTGTTGGTCGTGTTGCC
ATGATTGGCTTTGCTGCTTCCTTGTTGGGTGAGGGAATAACTGGGAAGGG
GATTCTAGCTCAGTTGAATTTAGAGACCGGAATTCCAATCTATGAAGCAG
AGCCACTGCTTTTATTTTTCATCTTGTTCACCTTGCTTGGAGCAATTGGA
GCTTTGGGTGACCGTGGTAAGTTCGTTGATGAGCCAGATGAGCCCACTGG
GCTCGGAGGAGCTGTCATTCCTCCAGGCAAAAGCTTAAGATCAGCGTTGG
GTCTCAAGGAAGGAGGTCCCATATTTGGATTCACGAAGTCAAACGAGCTG
TTTGTGGGAAGATTGGCTCAGTTGGGTATTGCATTCTCTTTGATTGGAGA
AATCATAACAGGGAAAGGAGCTCTAGCACAACTCAACATTGAGACTGGGA
TCC
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