CX300434

Overview
NameCX300434
Unique NameCX300434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length292
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1063..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.588e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.588e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.588e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.588e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.588e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  211 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.588e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  156 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.588e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.588e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  205 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.826e-24
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  224 KNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.826e-24
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  228 KNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
The following BLAST results are available for this feature:
BLAST of CX300434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB29_MAIZE4.588e-24100.00Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB24_TOBAC4.588e-24100.00Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL4.588e-24100.00Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC4.588e-24100.00Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ4.588e-24100.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_CUCSA4.588e-24100.00Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_ORYSJ4.588e-24100.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA4.588e-24100.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY7.826e-2498.04Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PYRPY7.826e-2498.04Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07010B12SK SaltLeaf1 Citrus clementina cDNA clone C07010B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300434 ID=CX300434; Name=CX300434; organism=Citrus clementina; type=EST; length=292bp
AAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGC
CATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTG
ACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGA
AAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATAT
CATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTA
TTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAAA
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