CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PEA (Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.338e-44
Identity = 90/114 (78.95%), Postives = 99/114 (86.84%), Query Frame = 1
Query:   37 MALRMWASSTANALRISCASK---TPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            MALRMWASSTANAL++S +S+   +P F++SRCFS+VLDGLKYA SHEWVKHEGSVAT GITDHAQDHL EVVFVELPE G S  +G GF  VESVKATSDVNSPISGEVIEVN
Sbjct:    1 MALRMWASSTANALKLSSSSRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN 114          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPU (Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria pubescens GN=GDCSH PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.132e-43
Identity = 87/111 (78.38%), Postives = 95/111 (85.59%), Query Frame = 1
Query:   37 MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            MALRMWASSTANALR+S A++     LSRCFSSVLDGLKYA+SHEWVKHEGSVAT GITDHAQDHL EVVFV+LPE G S  +  GF  VESVKATSDVNSPISGE++EVN
Sbjct:    1 MALRMWASSTANALRLSSATRPHYSPLSRCFSSVLDGLKYANSHEWVKHEGSVATVGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVN 111          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAN (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.479e-43
Identity = 87/111 (78.38%), Postives = 95/111 (85.59%), Query Frame = 1
Query:   37 MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            MALRMWASSTANALR+S A++     LSRCFSSVLDGLKYA+SHEWVKHEGSVAT GITDHAQDHL EVVFV+LPE G S  +  GF  VESVKATSDVNSPISGE++EVN
Sbjct:    1 MALRMWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVN 111          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPR (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.303e-43
Identity = 86/111 (77.48%), Postives = 95/111 (85.59%), Query Frame = 1
Query:   37 MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            MALR+WASSTANALR+S A++     LSRCFSSVLDGLKYA+SHEWVKHEGSVAT GITDHAQDHL EVVFV+LPE G S  +  GF  VESVKATSDVNSPISGE++EVN
Sbjct:    1 MALRIWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVN 111          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ORYSJ (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.643e-42
Identity = 85/114 (74.56%), Postives = 97/114 (85.09%), Query Frame = 1
Query:   37 MALRMWASSTANALRISCASKT---PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            MALR+WASS ANAL+ISC+  T   PA+++SR FS+VLDGLKY+SSHEWVK++GSVAT GITDHAQ HL EVVFVELPE GA   QGG F  VESVKATSD+NSPISGEV+EVN
Sbjct:    1 MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVN 114          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ORYSI (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.643e-42
Identity = 85/114 (74.56%), Postives = 97/114 (85.09%), Query Frame = 1
Query:   37 MALRMWASSTANALRISCASKT---PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            MALR+WASS ANAL+ISC+  T   PA+++SR FS+VLDGLKY+SSHEWVK++GSVAT GITDHAQ HL EVVFVELPE GA   QGG F  VESVKATSD+NSPISGEV+EVN
Sbjct:    1 MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVN 114          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_FLATR (Glycine cleavage system H protein, mitochondrial OS=Flaveria trinervia GN=GDCSH PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.870e-41
Identity = 86/113 (76.11%), Postives = 93/113 (82.30%), Query Frame = 1
Query:   37 MALRMWASSTANALRISCASKTPAFALSRCFSS--VLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            MALR+WASSTA ALR+S AS+     L RCFSS  VLDGLKYA+SHEWVKHEGSVAT GITDHAQDHL EVVFVELPE G S  +  GF  VESVKATSDVNSPISGE++EVN
Sbjct:    1 MALRIWASSTAKALRLSSASRPHFSPLFRCFSSAAVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVN 113          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAU (Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria australasica GN=GDCSH PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.870e-41
Identity = 86/113 (76.11%), Postives = 93/113 (82.30%), Query Frame = 1
Query:   37 MALRMWASSTANALRISCASKTPAFALSRCFSS--VLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            MALR+WASSTA ALR+S AS+     L RCFSS  VLDGLKYA+SHEWVKHEGSVAT GITDHAQDHL EVVFVELPE G S  +  GF  VESVKATSDVNSPISGE++EVN
Sbjct:    1 MALRIWASSTAKALRLSSASRPHFSPLFRCFSSAAVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVN 113          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH2_ARATH (Probable glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=At1g32470 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.870e-41
Identity = 87/115 (75.65%), Postives = 98/115 (85.22%), Query Frame = 1
Query:   37 MALRMWASSTANALRISC-ASKT---PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            MALRMWASSTANAL++S  ASK+   PAF++SRCFSSVL+GLKYA+SHEWVKHEGSVAT GITDHAQDHL EVVFVELPE  +S  +   F  VESVKATS++ SPISGEVIEVN
Sbjct:    1 MALRMWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVN 115          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MESCR (Glycine cleavage system H protein, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCSH PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.816e-40
Identity = 86/114 (75.44%), Postives = 93/114 (81.58%), Query Frame = 1
Query:   37 MALRMWASSTANALRISCASKT---PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            MALRMWASS ANAL +SCA K+   PA +LSRCFS+VLDGLKYASSHEWVKH GSVAT GITDHAQ HL +VVF ELPE GA    G  F  VESVKATSDVNSPISGE++EVN
Sbjct:    1 MALRMWASSAANALGVSCAPKSHLLPALSLSRCFSTVLDGLKYASSHEWVKHGGSVATIGITDHAQGHLGDVVFAELPEGGA-VSAGKPFASVESVKATSDVNSPISGEIVEVN 113          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_PEA1.338e-4478.95Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAPU1.132e-4378.38Glycine cleavage system H protein, mitochondrial (... [more]
GCSH_FLAAN1.479e-4378.38Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAPR4.303e-4377.48Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_ORYSJ3.643e-4274.56Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_ORYSI3.643e-4274.56Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLATR6.870e-4176.11Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAAU6.870e-4176.11Glycine cleavage system H protein, mitochondrial (... [more]
GCSH2_ARATH6.870e-4175.65Probable glycine cleavage system H protein 2, mito... [more]
GCSH_MESCR5.816e-4075.44Glycine cleavage system H protein, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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