CX300442

Overview
NameCX300442
Unique NameCX300442
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig867 contig Ccv1_Contig867:48..427. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300442 vs. ExPASy Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.803e-24
Identity = 49/95 (51.58%), Postives = 68/95 (71.58%), Query Frame = 3
Query:   30 KMEASHVAAICTLVVLLLAAETQVSVAVTCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 314
            KM+ S V A+  +V L L     V+ AVTC+PT+LSSCV AIT  + PS  CCSK+K Q+PCLC Y++NPSL++++N+P A++V S CG  +P C
Sbjct:    6 KMKMSVVCAV-VVVALFLIDVGPVAEAVTCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC 99          
BLAST of CX300442 vs. ExPASy Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.627e-21
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 3
Query:  111 VTCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 314
            VTCSP QLS C+  I S  P    CC K++EQ+PCLC YL+NPSLR+++N+PNAR++AS CG P P+C
Sbjct:    1 VTCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 68          
BLAST of CX300442 vs. ExPASy Swiss-Prot
Match: NLTP2_HORVU (Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 3
Query:   33 MEASHVAAICTLVVLLLAAETQVSVAVTCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 314
            M      A+  ++V+ LAA         C P QL+ C SAI   T PS  CC  ++ Q+ CLCQY+++P+   ++++P+AR   + CG P P C
Sbjct:    9 MRKEAAVAVMMVMVVTLAAGADAGAGAACEPAQLAVCASAILGGTKPSGECCGNLRAQQGCLCQYVKDPNYGHYVSSPHARDTLNLCGIPVPHC 102          
BLAST of CX300442 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.380e-12
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 3
Query:   54 AICTLVVLLLAAETQVSVAV---TCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 314
            A+  L V ++AA     V V   +C+  QL+ C  AI     P+  CCS ++ Q+ C CQ+ ++P   +++N+PNAR+  S+CG   P C
Sbjct:    6 AVLVLAVAMVAACGGGVVGVAGASCNAGQLTVCAGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of CX300442 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSJ (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica GN=LTP-2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.803e-12
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 3
Query:   54 AICTLVVLLLAAETQVSVAVT---CSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 314
            A+  L V ++AA     V V    C+  QL+ C  AI     P+  CCS ++ Q+ C CQ+ ++P   +++N+PNAR+  S+CG   P C
Sbjct:    6 AVLVLAVAMVAACGGGVVGVAGAGCNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of CX300442 vs. ExPASy Swiss-Prot
Match: NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.851e-12
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 3
Query:  117 CSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 314
            C  +QL+ C SAI S   PS  CC  ++ Q+PC CQY ++P+  ++I +P+AR    +CG   P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSCGLAVPHC 67          
BLAST of CX300442 vs. ExPASy Swiss-Prot
Match: NLT2G_WHEAT (Non-specific lipid-transfer protein 2G OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.800e-11
Identity = 26/66 (39.39%), Postives = 40/66 (60.61%), Query Frame = 3
Query:  117 CSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 314
            C  +QL+ C SAI S   PS  CC  ++ Q+ C CQY ++P+  ++I +P+AR   ++CG   P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC 67          
The following BLAST results are available for this feature:
BLAST of CX300442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NLTP_VIGUN7.803e-2451.58Probable non-specific lipid-transfer protein AKCS9... [more]
NLTP2_PRUAR1.627e-2158.82Non-specific lipid-transfer protein 2 OS=Prunus ar... [more]
NLTP2_HORVU1.021e-1536.17Probable non-specific lipid-transfer protein OS=Ho... [more]
NLTPX_ORYSI1.380e-1235.56Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTPX_ORYSJ1.803e-1235.56Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2P_WHEAT6.851e-1240.91Non-specific lipid-transfer protein 2P OS=Triticum... [more]
NLT2G_WHEAT5.800e-1139.39Non-specific lipid-transfer protein 2G OS=Triticum... [more]
back to top
Properties
Property NameValue
Genbank descriptionC07010C08SK SaltLeaf1 Citrus clementina cDNA clone C07010C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300442 ID=CX300442; Name=CX300442; organism=Citrus clementina; type=EST; length=380bp
GTAAGTCCATTTGATTCATACTACATCGAAAAATGGAGGCTTCGCATGTA
GCAGCCATTTGCACATTGGTGGTTCTTCTTCTGGCAGCTGAAACACAAGT
CTCAGTGGCAGTGACATGCAGCCCAACCCAACTGAGCTCTTGTGTTAGCG
CCATCACATCTTCAACTCCACCATCAAGGCTCTGCTGCAGCAAGATCAAA
GAACAGAAGCCTTGCCTTTGCCAGTACCTTCGAAACCCGAGCCTCAGGAA
GTTTATCAACACCCCAAATGCCAGGAGAGTTGCTAGCACTTGTGGCACTC
CCTTCCCAAAATGCTAAATTTCTCTTCTCTCCCATTTCTCTTTGCTGCAT
TAATCTCGTTTAATGCATAGTCTAATATCG
back to top