CX300448

Overview
NameCX300448
Unique NameCX300448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7870 contig Ccv1_Contig7870:3..405. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300448 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.602e-19
Identity = 55/129 (42.64%), Postives = 71/129 (55.04%), Query Frame = 2
Query:   23 MASISSTNFPALLPRSGFVPKGLT--HASPVCGLPAMATTRGRVRCSLDEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIYTGDL 403
            MA+I++++  +L+ R+  V        +SP+ GLP+M T R +V CS++ K                                   VDERM+TEGTGLPFGLSNN LGWILFGVFGLIWALYF+Y   L
Sbjct:    1 MATITASSSASLVARASLVHNSRVGVSSSPILGLPSM-TKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMAL-VDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGL 127          
BLAST of CX300448 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.757e-18
Identity = 54/126 (42.86%), Postives = 64/126 (50.79%), Query Frame = 2
Query:   26 ASISSTNFPALLPRSGFVPKGLTHASPVCGLPAMATTRGRVRCSLDEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIYTGDL 403
            AS  S   PALL     +   +  ++PV GLP M   +G VRCS++ K                                   VDERM+TEGTGLPFGLSNN LGWILFGVFGLIW  +F+YT  L
Sbjct:    8 ASTVSAARPALL-----LKPTVAISAPVLGLPPMGKKKGGVRCSMETKQGNVSVMGAGVSAAATAALTAVMSNPAMAL-----VDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSL 123          
BLAST of CX300448 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.299e-14
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 2
Query:  275 VDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIYTGDL 403
            VDERM+TEGTGL  GLSNN LGWIL GVFGLIW+LY IYT DL
Sbjct:   71 VDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDL 113          
The following BLAST results are available for this feature:
BLAST of CX300448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL2.602e-1942.64Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH3.757e-1842.86Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ4.299e-1481.40Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionC07010D03SK SaltLeaf1 Citrus clementina cDNA clone C07010D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300448 ID=CX300448; Name=CX300448; organism=Citrus clementina; type=EST; length=403bp
GCAGGGCAAAAAACAAAAAAAAATGGCATCAATTTCATCAACCAACTTTC
CTGCATTGCTCCCAAGATCAGGTTTTGTGCCCAAGGGCTTAACTCACGCA
TCACCAGTCTGTGGCCTGCCTGCAATGGCAACAACAAGGGGACGTGTGAG
ATGCAGCTTAGATGAAAAGGCACCAGCTGCTGCCAGCAGCAAGAGCTCAA
GAGCAAGCATGGTTGCATCACTTATGGCAGCCGCCGCAGCCTTGAGTACG
GCCGCAGGGTCAGCCATGGCGTTGGTGGATGAGAGAATGACCACAGAAGG
AACAGGGCTTCCATTTGGACTAAGCAACAACACTCTTGGGTGGATTCTCT
TTGGTGTGTTTGGATTGATTTGGGCTCTCTATTTTATTTACACTGGCGAT
CTT
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