CX300454

Overview
NameCX300454
Unique NameCX300454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14623 contig Ccv1_Contig14623:245..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300454 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.804e-36
Identity = 66/81 (81.48%), Postives = 77/81 (95.06%), Query Frame = 1
Query:    4 EINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 246
            E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDD+Q+GEGFVLTCAAYPTSDVTIETHKEE++
Sbjct:   67 EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
BLAST of CX300454 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.886e-36
Identity = 67/82 (81.71%), Postives = 76/82 (92.68%), Query Frame = 1
Query:    1 EEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 246
            +E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG VDQS++SFLDDDQ+ EGFVLTCAAYPTSDVTIETHKEEEL
Sbjct:   14 QEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
BLAST of CX300454 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.516e-35
Identity = 65/82 (79.27%), Postives = 77/82 (93.90%), Query Frame = 1
Query:    1 EEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 246
            +E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDDDQ+ EGFVLTCAAYPTSDVTIETH+EE++
Sbjct:   14 QEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of CX300454 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.585e-35
Identity = 66/80 (82.50%), Postives = 76/80 (95.00%), Query Frame = 1
Query:    7 INCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I+CPDDT+ILDAAEEAGLDLPYSCRAGACS+C GK+V+GT+DQS+QSFLDDDQ+  G+VLTC AYPTSDVTIETHKEE+L
Sbjct:   18 IDCPDDTYILDAAEEAGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDL 97          
BLAST of CX300454 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.859e-34
Identity = 67/82 (81.71%), Postives = 72/82 (87.80%), Query Frame = 1
Query:    1 EEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 246
            + I CPDDT+ILDAAEEAGLDLPYSCRAGACSSC GKV +GTVDQS+QSFLDD QM  GFVLTC AYPTSD TI THKEE+L
Sbjct:   14 QTIECPDDTYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDL 95          
BLAST of CX300454 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.859e-34
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 1
Query:    1 EEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 249
            + I+CPDDT++LDAAEEAGLDLPYSCRAG+CSSC GKV +GTVDQ +QSFLDDDQ+  GFVLTC AYP  DVTIETHKEE++A
Sbjct:   14 QTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDIA 96          
BLAST of CX300454 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.368e-34
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    1 EEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 246
            + I+CPDDT++LDAAEEAGLDLPYSCRAG+CSSCTGKV +GTVDQ +QSFLDDDQ+  GFVLTC A+P  DVTIETHKEE++
Sbjct:   14 QTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          
BLAST of CX300454 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 8.317e-34
Identity = 66/80 (82.50%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    7 INCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I CP DT+ILDAAEEAGLDLPYSCRAGACSSC GKV +GTVDQS+QSFLDD QMG GFVLTC AYPTSD TI+TH+EE L
Sbjct:   46 IECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of CX300454 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 8.317e-34
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    7 INCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I+  DDT+ILDAAEE G+DLPYSCRAGACS+C GKVVSGTVDQS+QSFLDDDQ+  GFVLTC AYPTSDVTIETHKEE+L
Sbjct:   19 IDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of CX300454 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 8.317e-34
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    7 INCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I+  DDT+ILDAAEE G+DLPYSCRAGACS+C GKVVSGTVDQS+QSFLDDDQ+  GFVLTC AYPTSDVTIETHKEE+L
Sbjct:   19 IDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
The following BLAST results are available for this feature:
BLAST of CX300454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER2_ARATH6.804e-3681.48Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER_BRANA8.886e-3681.71Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER3_RAPSA1.516e-3579.27Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER1_APHFL2.585e-3582.50Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FER_SCEQU2.859e-3481.71Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER1_PHYES2.859e-3477.11Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FER1_PHYAM6.368e-3476.83Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]
FER_CHLRE8.317e-3482.50Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER1_SYNP68.317e-3482.50Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE78.317e-3482.50Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]

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Properties
Property NameValue
Genbank descriptionC07010D09SK SaltLeaf1 Citrus clementina cDNA clone C07010D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300454 ID=CX300454; Name=CX300454; organism=Citrus clementina; type=EST; length=380bp
GAAGAAATCAACTGTCCTGATGACACGTTTATTCTTGATGCTGCTGAAGA
AGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTTCCT
GTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTT
CTGGATGATGATCAAATGGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTA
TCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCGCTG
GTTAATAATGTGCTCTTGATATCTCATTATTATCTTCTCTTTTATGTGTT
GTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAATTTG
AGAATGATTCTTGGAATGTGTTTTTATTTC
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