CX300460

Overview
NameCX300460
Unique NameCX300460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10821 contig Ccv1_Contig10821:423..1013. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.067e-39
Identity = 84/118 (71.19%), Postives = 88/118 (74.58%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSCRS 354
            MNDEFSRVLHQQMEFFSSNPS DTLNRVRGEVSEIR++MVENIEKI+ERGDRIELLVDKTATMQD +FHFRKQSKRLRRALWMKN                            PSCRS
Sbjct:  104 MNDEFSRVLHQQMEFFSSNPSVDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKNAKLLVLLTCLIVFLLYIIIASFCGGITLPSCRS 221          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.015e-26
Identity = 50/85 (58.82%), Postives = 72/85 (84.71%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            MNDEFSRVL QQMEF+S++P+AD ++R++GE+S++R +M+ENI+K+L+RG+R+ELLVDKT  MQ   F FRKQ++R R  +W +N
Sbjct:  104 MNDEFSRVLSQQMEFYSNDPNADRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRN 188          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.146e-25
Identity = 48/85 (56.47%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            MNDEFSRVL+QQ+E++S++P+ADT++R++GE++++R +M+ENI+ IL+RG+R+ELLVDKTA MQ   F FRKQ++R    +W +N
Sbjct:  103 MNDEFSRVLNQQIEYYSNDPNADTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRN 187          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.354e-25
Identity = 47/85 (55.29%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            MN+EFSRVL QQ++++S++P+AD +NR++GE++++R +M+ENI+K+L+RG+R+ELLVDKTA MQ   F FRKQ++R R  +W +N
Sbjct:  103 MNEEFSRVLSQQIDYYSNDPNADRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRN 187          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15
Identity = 36/86 (41.86%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIE-KILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            MN +FSR L   M+ +S+    DT++R   E+ E++ I+V +I  ++L+RG++IE+LV++T T+   +F F+KQSK+L+ A+W KN
Sbjct:  102 MNSDFSRTLENLMDHYSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKN 187          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.648e-14
Identity = 35/86 (40.70%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSA-DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            +N EF   L + M++ + +P     L++V+ +V+E++ +M+ENIEK+L+RG++IELLVDKT  ++  A  FR Q  +++R LW +N
Sbjct:  106 LNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFEN 191          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.516e-14
Identity = 36/86 (41.86%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSA-DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            +N EF   L + M++   +P     L +V+ +VSE++ +M+ENIEK+L+RG++IELLVDKT  ++  A  FR Q  ++RR +W +N
Sbjct:  106 LNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQN 191          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            MN EFS VL  Q++  S N S D +   + +V E++ IMV NI+ + +RG+R+ELL+DKT  + D +  F+  S+ L RA+ MKN
Sbjct:  102 MNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKN 186          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 33/86 (38.37%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSA-DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            ++ EF  +L + M++  S+P     L++++ +++E++ IM++NIEK+L+RG++IELLVDKT  +Q  A  F++Q ++LRR +W+++
Sbjct:  125 LDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQS 210          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            MN EFS VL  Q++  S N S D +   + +V E++ IMV NI+ + +RG+R+ELL+DKT  + D +  F+  S+ L RA+ +KN
Sbjct:  102 MNSEFSSVLAAQLKHHSENQSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKN 186          
The following BLAST results are available for this feature:
BLAST of CX300460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
VA714_ARATH1.067e-3971.19Vesicle-associated membrane protein 714 OS=Arabido... [more]
VA713_ARATH3.015e-2658.82Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA712_ARATH1.146e-2556.47Vesicle-associated membrane protein 712 OS=Arabido... [more]
VA711_ARATH4.354e-2555.29Vesicle-associated membrane protein 711 OS=Arabido... [more]
VAM7B_DICDI5.335e-1541.86Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VA726_ARATH2.648e-1440.70Putative vesicle-associated membrane protein 726 O... [more]
VA722_ARATH4.516e-1441.86Vesicle-associated membrane protein 722 OS=Arabido... [more]
VAMP7_MOUSE7.704e-1443.53Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VA727_ARATH7.704e-1438.37Vesicle-associated membrane protein 727 OS=Arabido... [more]
VAMP7_RAT1.314e-1342.35Vesicle-associated membrane protein 7 OS=Rattus no... [more]

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Properties
Property NameValue
Genbank descriptionC07010E03SK SaltLeaf1 Citrus clementina cDNA clone C07010E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300460 ID=CX300460; Name=CX300460; organism=Citrus clementina; type=EST; length=591bp
ATGAATGATGAGTTTTCAAGGGTATTGCATCAGCAGATGGAATTTTTCTC
CAGCAATCCTAGTGCAGATACTCTCAATCGTGTGAGAGGGGAAGTTAGTG
AGATACGCACCATCATGGTGGAGAATATTGAAAAAATATTGGAGAGAGGT
GATAGGATTGAGCTTCTTGTTGACAAAACTGCAACAATGCAAGACGGCGC
ATTTCACTTTAGGAAACAGTCTAAGCGCCTTCGTAGAGCGCTTTGGATGA
AAAATGCTAAGCTATTGGCCCTCTTGACAGGCTTAATTGTTCTGTTGCTG
TACATAATAATTGCTGCTGCTTGTGGAGGCATCACTTTACCTTCATGCAG
ATCTTGAGTCGTGGTCAACTGGTGTTAAATTACTGCTCGGGTGTGCATTG
ATGTTGTTTGTTGTCAATTATGTGAATTAATCTTGGACGGGTTTCCTTGG
TTTTGTGGGTCAACTATTTAAGGAGTATGTGGAAATATAGTATCTATACA
GCTGCAAGGTGCCAGAAATAATCCTGCAGATGCTCTCATTATAACATTCA
GTATAAGGGACATATCTCGGAAGTCTGACGAGATGCCATCT
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