CX300461

Overview
NameCX300461
Unique NameCX300461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11346 contig Ccv1_Contig11346:30..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300461 vs. ExPASy Swiss-Prot
Match: MBF1B_ARATH (Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.287e-62
Identity = 119/139 (85.61%), Postives = 132/139 (94.96%), Query Frame = 1
Query:   25 MAGIGPITQDWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 441
            MAGIGPITQDWEPVVI+K+APNAA K+DEK VNAARR+GADIETVRK +AG+NKAASS TSLNT+KLD+DTENL+HDRVP+ELKKAI+QAR +KKLTQSQLA LINEKPQVIQEYESGKAIPNQQIL+KLERALG KLR
Sbjct:    1 MAGIGPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGTSLNTKKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKAIPNQQILSKLERALGAKLR 139          
BLAST of CX300461 vs. ExPASy Swiss-Prot
Match: MBF1A_ARATH (Multiprotein-bridging factor 1a OS=Arabidopsis thaliana GN=MBF1A PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.858e-61
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = 1
Query:   25 MAGIGPITQDWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 441
            MAGIGPITQDWEPVVI+KK  NAA K+DEK VNAARR+GADIETVRK +AGTNKAASS TSLNT+ LD+DTENL H+RVP+ELKKAI+QAR DKKLTQSQLAQ+INEKPQVIQEYESGKAIPNQQIL+KLERALG KLR
Sbjct:    1 MAGIGPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGTSLNTKMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQQILSKLERALGAKLR 139          
BLAST of CX300461 vs. ExPASy Swiss-Prot
Match: MBF1C_ARATH (Multiprotein-bridging factor 1c OS=Arabidopsis thaliana GN=MBF1C PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.652e-33
Identity = 70/137 (51.09%), Postives = 99/137 (72.26%), Query Frame = 1
Query:   37 GPITQDWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTS--LNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 441
            G +TQDWEPVV+ K    +   +D K VNAA R G  ++TV+K  AG+NK   S+    +NT+KL+E+TE  A DRV +E++  I +AR +KK++Q+ LA+ INE+ QV+QEYE+GKA+PNQ +L K+E+ LGVKLR
Sbjct:    7 GAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLR 143          
BLAST of CX300461 vs. ExPASy Swiss-Prot
Match: EDF1_HUMAN (Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.418e-31
Identity = 74/141 (52.48%), Postives = 92/141 (65.25%), Query Frame = 1
Query:   52 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXXINK 471
            DW+ V V++KK P AA  K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I Q R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:    5 DWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CX300461 vs. ExPASy Swiss-Prot
Match: EDF1_BOVIN (Endothelial differentiation-related factor 1 OS=Bos taurus GN=EDF1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.418e-31
Identity = 74/141 (52.48%), Postives = 92/141 (65.25%), Query Frame = 1
Query:   52 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXXINK 471
            DW+ V V++KK P AA  K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I Q R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:    5 DWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CX300461 vs. ExPASy Swiss-Prot
Match: EDF1_CHICK (Endothelial differentiation-related factor 1 homolog OS=Gallus gallus GN=EDF1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.830e-31
Identity = 71/131 (54.20%), Postives = 91/131 (69.47%), Query Frame = 1
Query:   52 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 441
            DW+ V V++KK P+AA  K ++ V AA+R G D+ET +K  AG NK      + NT KLD +TE L HDRVP E+ K I Q R  K +TQ  LA  INEKPQVI +YESG+AIPN Q++ K+ERA+G+KLR
Sbjct:    5 DWDTVTVLRKKGPSAAQAKSKQAVLAAQRRGEDVETSKKWAAGQNK--QHFITKNTAKLDRETEELHHDRVPLEVGKVIQQGRQSKGMTQKDLATKINEKPQVIADYESGRAIPNNQVMGKIERAIGLKLR 133          
BLAST of CX300461 vs. ExPASy Swiss-Prot
Match: EDF1_RAT (Endothelial differentiation-related factor 1 OS=Rattus norvegicus GN=Edf1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.945e-31
Identity = 73/141 (51.77%), Postives = 92/141 (65.25%), Query Frame = 1
Query:   52 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXXINK 471
            DW+ V V++KK P AA  K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I + R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:    5 DWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQRGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CX300461 vs. ExPASy Swiss-Prot
Match: EDF1_MOUSE (Endothelial differentiation-related factor 1 OS=Mus musculus GN=Edf1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.945e-31
Identity = 73/141 (51.77%), Postives = 92/141 (65.25%), Query Frame = 1
Query:   52 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXXINK 471
            DW+ V V++KK P AA  K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I + R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:    5 DWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQRGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CX300461 vs. ExPASy Swiss-Prot
Match: EDF1_XENLA (Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis GN=edf1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.894e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1
Query:   52 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 441
            DW+ V V++KK P AA  K ++ + AA+R G ++ET +K  AG NK    + + NT KLD +TE L HDRVP E+ K I Q R  K +TQ  LA  INEKPQVI +YE GKAIPN Q++ K+ER +G+KLR
Sbjct:    5 DWDTVTVLRKKGPTAAQAKSKQAITAAQRRGEEVETSKKWSAGQNK--QHTITRNTAKLDRETEELHHDRVPLEVGKVIQQGRQGKGMTQKDLATKINEKPQVIADYECGKAIPNNQVMGKIERVIGLKLR 133          
BLAST of CX300461 vs. ExPASy Swiss-Prot
Match: EDF1_DANRE (Endothelial differentiation-related factor 1 homolog OS=Danio rerio GN=edf1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.100e-29
Identity = 67/130 (51.54%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   52 DWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 441
            DW+ V + +K  +AA  K ++ V AA+R G  +ET +K  AG NK      + NT KLD +TE L+H RVP E+ K I Q R +K LTQ  LA  INEKPQ+I EYE GKAIPN Q++ K+ERA+G+KLR
Sbjct:    5 DWDTVTVLRKKGSAAQSKSKQAVTAAQRKGEAVETSKKWAAGQNK--QHVVTKNTAKLDRETEELSHQRVPLEVGKVIQQGRQNKGLTQKDLATKINEKPQIIAEYECGKAIPNNQVMGKIERAIGLKLR 132          
The following BLAST results are available for this feature:
BLAST of CX300461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
MBF1B_ARATH1.287e-6285.61Multiprotein-bridging factor 1b OS=Arabidopsis tha... [more]
MBF1A_ARATH1.858e-6184.89Multiprotein-bridging factor 1a OS=Arabidopsis tha... [more]
MBF1C_ARATH3.652e-3351.09Multiprotein-bridging factor 1c OS=Arabidopsis tha... [more]
EDF1_HUMAN3.418e-3152.48Endothelial differentiation-related factor 1 OS=Ho... [more]
EDF1_BOVIN3.418e-3152.48Endothelial differentiation-related factor 1 OS=Bo... [more]
EDF1_CHICK5.830e-3154.20Endothelial differentiation-related factor 1 homol... [more]
EDF1_RAT9.945e-3151.77Endothelial differentiation-related factor 1 OS=Ra... [more]
EDF1_MOUSE9.945e-3151.77Endothelial differentiation-related factor 1 OS=Mu... [more]
EDF1_XENLA2.894e-3051.91Endothelial differentiation-related factor 1 homol... [more]
EDF1_DANRE1.100e-2951.54Endothelial differentiation-related factor 1 homol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07010E04SK SaltLeaf1 Citrus clementina cDNA clone C07010E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300461 ID=CX300461; Name=CX300461; organism=Citrus clementina; type=EST; length=547bp
GAGATATTTGATCGAGGAGTGGACATGGCCGGAATCGGACCGATCACACA
GGACTGGGAGCCGGTGGTGATTAAGAAGAAAGCCCCTAACGCCGCCACCA
AGAAGGACGAGAAGGTCGTTAACGCTGCCCGCCGCGCCGGTGCCGATATC
GAGACTGTCAGAAAATCACATGCTGGCACAAACAAGGCTGCCTCGAGTAG
CACTTCTCTGAACACCAGGAAGCTTGATGAAGATACAGAGAACCTTGCTC
ATGATCGAGTGCCTAGTGAACTCAAGAAAGCCATTGTTCAGGCACGAAAT
GATAAGAAACTTACCCAGTCTCAACTTGCTCAGTTGATCAATGAGAAGCC
CCAGGTGATTCAGGAATATGAATCAGGAAAAGCCATTCCAAATCAGCAGA
TACTTACCAAGCTGGAGAGGGCCCTTGGTGTGAAGCTTCGAGGAAAGAAG
TGAGGAGGAGGGATAAATAAAAACTGCTACCAGGACTTGATGTTGTGTCC
TGTTGTTGAGTCTTCAAAATGGGTGCTGTATATGAATGTTTTCTCCT
back to top