CX300465

Overview
NameCX300465
Unique NameCX300465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10872 contig Ccv1_Contig10872:65..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300465 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31
Identity = 79/146 (54.11%), Postives = 93/146 (63.70%), Query Frame = 1
Query:  184 VAEEKAVTQ------LHDQEKPVDDSKALAVVD-QTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVE 600
            VA+EKA+          ++EKP DDSKAL VV+ + P+                DRD  LA V  EKR S IKAWEESEK+KAENKAQKK+SA+ AWEN              EQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+E
Sbjct:   29 VADEKAIVAPALPPPAEEKEKP-DDSKALVVVETKAPEPADEKKEGSI------DRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIE 167          
BLAST of CX300465 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.088e-30
Identity = 75/140 (53.57%), Postives = 92/140 (65.71%), Query Frame = 1
Query:  181 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVE 600
            DVAEEK   Q    E+  DDSKAL VV++  +                DRDV LA++ KEKR SF++AWEESEK+KAENKA+KK++ V AWEN              EQLE+KKAEYAE+MKNKVA +HKEAEE+RAM+E
Sbjct:   48 DVAEEKI--QNPPPEQIFDDSKALTVVEKPVEEPAPAKPASASL----DRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIE 181          
BLAST of CX300465 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.955e-28
Identity = 74/140 (52.86%), Postives = 92/140 (65.71%), Query Frame = 1
Query:  181 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVE 600
            +VA+EK    +H+   P  +SKALAVV++  +                DRDV LA++EKEK+ SFIKAWEESEK+KAEN+AQKK+S V AWEN              E+LE+KKA+Y EKMKNKVA +HK AEEKRAMVE
Sbjct:   30 EVADEK----IHNP--PPVESKALAVVEKPIEEHTPKKASSGSA----DRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVE 159          
The following BLAST results are available for this feature:
BLAST of CX300465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
REMO_SOLTU5.495e-3154.11Remorin OS=Solanum tuberosum PE=1 SV=1[more]
Y3126_ARATH2.088e-3053.57Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_ARATH1.955e-2852.86Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC07010E08SK SaltLeaf1 Citrus clementina cDNA clone C07010E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300465 ID=CX300465; Name=CX300465; organism=Citrus clementina; type=EST; length=602bp
ACATTATTGAAAGAAAATATTGAGAAGCTAATCGCTTTGTCGTAGTGAGC
TGTATACGCGAAGTCTCTGTAGACGATAATGGCAGAGGAGCAAGTGAAGA
AAGTAGAAGCTGAGACGCCAGCGGCCCCAGCTCCAGCTCCAGCTCTTGCT
CCAGCTCCGGCTCCGGCTGTCCCCAACAACGACGTCGCGGAGGAGAAAGC
TGTTACTCAATTACATGATCAAGAGAAGCCTGTTGATGACTCCAAAGCTC
TCGCAGTAGTTGATCAAACTCCAGATTCGGCCAAAAAGAAAATTTCTGGG
GAAAAGAAAATTTCTGGATCGCATGATAGAGATGTTGCTCTTGCAGAGGT
CGAAAAGGAAAAGAGAGAGTCTTTTATCAAGGCATGGGAAGAGAGTGAAA
AAACAAAAGCAGAGAATAAGGCTCAGAAAAAGCTCTCAGCTGTTGCTGCA
TGGGAAAATAGCAAGAAAGCATCTCTAGAAGCCAAACTGAAAAAGATTGA
GGAACAACTGGAGAGGAAGAAGGCAGAGTATGCTGAAAAAATGAAAAATA
AGGTAGCTCTAGTTCACAAGGAAGCAGAAGAGAAAAGGGCAATGGTTGAA
GC
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