CX300467

Overview
NameCX300467
Unique NameCX300467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig838 contig Ccv1_Contig838:1..504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 8.718e-57
Identity = 108/122 (88.52%), Postives = 116/122 (95.08%), Query Frame = 3
Query:    3 VKPPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 368
            VKPP SFTQEE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAV+FADACLRGLRGDAGV+ECAFV+SQVTELPFFASKVRLGR G EE++ LGPLNEYERIGLEKAKKELAGSI+KG+SF
Sbjct:  232 VKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 353          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 3.313e-56
Identity = 107/122 (87.70%), Postives = 116/122 (95.08%), Query Frame = 3
Query:    3 VKPPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 368
            VKPP SFTQEE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAV+FADACLRGLRGDAGVVECAFV+SQVTELPFFA+KVRLGR G +E++ LGPLNEYERIGLEKAKKELAGSI+KG+SF
Sbjct:  232 VKPPSSFTQEEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSSQVTELPFFATKVRLGRNGIDEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 353          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.644e-55
Identity = 106/125 (84.80%), Postives = 115/125 (92.00%), Query Frame = 3
Query:    3 VKPPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            VKPP SFT  E EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA +FADACLRGLRGDA V+EC+FVASQVTEL FFA+KVRLGR GAEE+FQLGPLNEYER+GLEKAK+ELAGSIQKG+ F +K
Sbjct:  234 VKPPSSFTPSEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVIECSFVASQVTELAFFATKVRLGRTGAEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 1.644e-55
Identity = 106/125 (84.80%), Postives = 115/125 (92.00%), Query Frame = 3
Query:    3 VKPPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            VKPP SFT  E EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA +FADACLRGLRGDA V+EC+FVASQVTEL FFA+KVRLGR GAEE+FQLGPLNEYER+GLEKAK+ELAGSIQKG+ F +K
Sbjct:  234 VKPPSSFTPSEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVIECSFVASQVTELAFFATKVRLGRTGAEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.147e-55
Identity = 107/125 (85.60%), Postives = 115/125 (92.00%), Query Frame = 3
Query:    3 VKPPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            VKPP SFT +E EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA +FADACLRGLRGDA VVEC+FVASQVTEL FFA+KVRLGR GAEE++QLGPLNEYERIGLEKAK ELAGSIQKG+ F +K
Sbjct:  230 VKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVVECSFVASQVTELAFFATKVRLGRTGAEEVYQLGPLNEYERIGLEKAKDELAGSIQKGVEFIRK 354          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 2.805e-55
Identity = 105/125 (84.00%), Postives = 117/125 (93.60%), Query Frame = 3
Query:    3 VKPPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            VKPPCSFTQ+E EYLT+RIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDA +VECA+VAS VTELPFFASKVRLGR G +E++ LGPLNEYER+GLEKAKKEL+ SI KG++F+KK
Sbjct:  230 VKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDANIVECAYVASHVTELPFFASKVRLGRCGIDEVYGLGPLNEYERMGLEKAKKELSVSIHKGVTFAKK 354          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 9.022e-54
Identity = 105/125 (84.00%), Postives = 111/125 (88.80%), Query Frame = 3
Query:    3 VKPPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            V PPCSFT EE  YLT RIQNGGTEVVEAKAGAGSATLSMAYAA +FADACLRGLRGDAG+VEC+FVASQVTELPFFASKVRLGR G EEI  LGPLNE+ER GLEKAKKELA SIQKG++F  K
Sbjct:  232 VNPPCSFTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKFADACLRGLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILSLGPLNEFERAGLEKAKKELAESIQKGVAFINK 356          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 9.975e-53
Identity = 102/125 (81.60%), Postives = 111/125 (88.80%), Query Frame = 3
Query:    3 VKPPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            +KPPCSFT +E EYLT RIQNGG EVVEAKAGAGSATLSMAYAAV+FADACL  LRGDAG++ECA+VASQVTELPFFASKVRLGR G EEI  LGPLN+YER  LEKAKKELA SI+KGISF +K
Sbjct:  229 IKPPCSFTPKEIEYLTGRIQNGGPEVVEAKAGAGSATLSMAYAAVKFADACLHALRGDAGIIECAYVASQVTELPFFASKVRLGRVGVEEILPLGPLNDYERESLEKAKKELAASIEKGISFIRK 353          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDHM2_ARATH (Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.916e-36
Identity = 75/123 (60.98%), Postives = 91/123 (73.98%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  + + +    LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL+GL G   VVEC+FV S +TELPFFASKVRLG+ G EE+  LGPL+++E+ GLE  K EL  SI+KGI F+ +
Sbjct:  219 PQANLSDDLIRALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLEALKAELKSSIEKGIKFANQ 341          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDHM_CITLA (Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.484e-36
Identity = 75/121 (61.98%), Postives = 90/121 (74.38%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFS 371
            P  + + +    LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL+GL G   VVEC+FV S VTELPFFASKV+LG+ G E +  LGPL+++E+ GLEK K EL  SI+KGI F+
Sbjct:  224 PRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVLDLGPLSDFEKEGLEKLKPELKASIEKGIQFA 344          
The following BLAST results are available for this feature:
BLAST of CX300467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
MDHG_CITLA8.718e-5788.52Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHG_CUCSA3.313e-5687.70Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG2_BRANA1.644e-5584.80Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA1.644e-5584.80Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHG1_ARATH2.147e-5585.60Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG2_ARATH2.805e-5584.00Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]
MDHG_ORYSJ9.022e-5484.00Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHG_SOYBN9.975e-5381.60Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHM2_ARATH2.916e-3660.98Malate dehydrogenase 2, mitochondrial OS=Arabidops... [more]
MDHM_CITLA8.484e-3661.98Malate dehydrogenase, mitochondrial OS=Citrullus l... [more]

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Properties
Property NameValue
Genbank descriptionC07010E10SK SaltLeaf1 Citrus clementina cDNA clone C07010E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300467 ID=CX300467; Name=CX300467; organism=Citrus clementina; type=EST; length=504bp
AGGTTAAGCCTCCTTGTAGCTTCACTCAAGAAGAAGCTGAATACCTGACG
AACCGCATACAAAATGGTGGAACAGAAGTTGTTGAGGCAAAAGCTGGGGC
TGGCTCTGCAACACTCTCAATGGCTTATGCAGCGGTTGAATTTGCGGATG
CATGCCTCCGTGGGCTGAGAGGAGATGCTGGTGTTGTGGAATGTGCATTC
GTAGCTTCTCAGGTGACGGAACTCCCTTTCTTCGCATCCAAGGTACGGCT
TGGTCGCCAAGGAGCTGAAGAAATCTTCCAACTTGGACCTTTAAATGAAT
ATGAGAGGATTGGCTTGGAGAAAGCGAAGAAAGAGTTAGCTGGAAGCATT
CAAAAGGGCATCTCCTTCAGCAAGAAATGAAGCGATGCCAAGAAAAATTC
CATCGGTTAAGTTTATTATCGCTCTTGAGTCACCGTCTCCTGTAATTAGC
AAGCCTTAATGTTGTACCCAGAAACAGTCGGAAAATGTATTTTTCCAACA
AGCG
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