CX300477

Overview
NameCX300477
Unique NameCX300477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig473 contig Ccv1_Contig473:182..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 6.613e-39
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 2
Query:    2 PVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGALG 259
            P D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++NSIAFLFDGRRLR EQTPDEL+MEDGDEIDAMLHQTGG+ G
Sbjct:   11 PGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGSGG 96          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.637e-39
Identity = 76/80 (95.00%), Postives = 79/80 (98.75%), Query Frame = 2
Query:   17 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 256
            AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++N+IAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG L
Sbjct:   19 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe GN=pmt3 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.677e-23
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   20 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ FL DG R+R +QTP EL+MEDGD+I+A+L Q GG
Sbjct:   35 HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO3_MOUSE (Small ubiquitin-related modifier 3 OS=Mus musculus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.457e-19
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 2
Query:   11 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGALGSG 265
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+   G
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGSASRG 97          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO3_XENTR (Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.820e-19
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   11 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            ++ HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO3_XENLA (Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.820e-19
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   11 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            ++ HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO3_BOVIN (Small ubiquitin-related modifier 3 OS=Bos taurus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.820e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   11 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA------LGSG 265
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+      LGSG
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGSRVASCLLGSG 103          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SMO2A_XENLA (Small ubiquitin-related modifier 2-A OS=Xenopus laevis GN=sumo2-A PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.928e-19
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    8 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 253
            + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENNDHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 94          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO3_DANRE (Small ubiquitin-related modifier 3 OS=Danio rerio GN=sumo3 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.297e-18
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   11 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 253
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 93          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO2_XENTR (Small ubiquitin-related modifier 2 OS=Xenopus tropicalis GN=sumo2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.297e-18
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    8 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 253
            + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENNDHINLKVAGQDGSVVQFKIKRHTPLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 94          
The following BLAST results are available for this feature:
BLAST of CX300477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMT3_ARATH6.613e-3989.53Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
SMT3_ORYSJ8.637e-3995.00Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
PMT3_SCHPO8.677e-2362.34Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharo... [more]
SUMO3_MOUSE4.457e-1952.94Small ubiquitin-related modifier 3 OS=Mus musculus... [more]
SUMO3_XENTR5.820e-1956.25Small ubiquitin-related modifier 3 OS=Xenopus trop... [more]
SUMO3_XENLA5.820e-1956.25Small ubiquitin-related modifier 3 OS=Xenopus laev... [more]
SUMO3_BOVIN5.820e-1952.75Small ubiquitin-related modifier 3 OS=Bos taurus G... [more]
SMO2A_XENLA9.928e-1953.66Small ubiquitin-related modifier 2-A OS=Xenopus la... [more]
SUMO3_DANRE1.297e-1854.32Small ubiquitin-related modifier 3 OS=Danio rerio ... [more]
SUMO2_XENTR1.297e-1853.66Small ubiquitin-related modifier 2 OS=Xenopus trop... [more]

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Properties
Property NameValue
Genbank descriptionC07010F08SK SaltLeaf1 Citrus clementina cDNA clone C07010F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300477 ID=CX300477; Name=CX300477; organism=Citrus clementina; type=EST; length=426bp
GCCCGTCGATCAGTCGGCGCACATTAACCTCAAAGTCAAGGGCCAGGATG
GCAATGAGGTGTTTTTTAGAATTAAGCGAAGCACCCAGTTGAAAAAGCTC
ATGAATGCCTACTGTGATCGGCAGTCGGTGGAGTTAAACTCTATTGCTTT
CTTGTTTGATGGGCGGAGACTCCGAGGAGAGCAGACTCCAGATGAGCTTG
AGATGGAGGATGGAGATGAAATTGATGCAATGCTGCATCAGACTGGAGGT
GCGCTTGGAAGCGGTTAGCTGCAGTTTGAAATATTTTGAGCATCGCTGGC
GGACTTGATGTTTGAGTTTTTTAAATTAGCCTATATCTATGGAAATATTA
CTGTAAATGATGACTTGGATCTTATAATTAACTTGAATTTAAGTCATGGT
TTATTATCAAAAAAAAAAAAAAAAAA
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