CX300478

Overview
NameCX300478
Unique NameCX300478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3964 contig Ccv1_Contig3964:747..1375. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300478 vs. ExPASy Swiss-Prot
Match: NUDT1_ARATH (Nudix hydrolase 1 OS=Arabidopsis thaliana GN=NUDT1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.671e-39
Identity = 70/96 (72.92%), Postives = 81/96 (84.38%), Query Frame = 1
Query:  196 GESFEECAARELKEETGLDIEKIEFLTVTNSVFLENPKPSHYVVIFLRAALADPLQEPQNLEPDKCHGWDWYDWNNLPQPLFWPLEKMVQSGFNPF 483
            GESFEECAARE+ EETGL IEK++ LTVTN+VF E P PSHYV + +RA L DP QEP+N+EP+KC GWDWYDW NLP+PLFWPLEK+  SGFNPF
Sbjct:   46 GESFEECAAREVMEETGLKIEKMKLLTVTNNVFKEAPTPSHYVSVSIRAVLVDPSQEPKNMEPEKCEGWDWYDWENLPKPLFWPLEKLFGSGFNPF 141          
BLAST of CX300478 vs. ExPASy Swiss-Prot
Match: NUD15_HUMAN (Probable 7,8-dihydro-8-oxoguanine triphosphatase NUDT15 OS=Homo sapiens GN=NUDT15 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.130e-13
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  196 GESFEECAARELKEETGLDIEKIEFLTVTNSVFLENPKPSHYVVIFLRAAL-ADPLQEPQNLEPDKCHGWDWYDWNNLP--QPLFWPLEKMVQSGFNPFPID 492
            GE++EECA RE  EE  L ++ + F +V NS F+E  +  HYV I ++  +      EP+N+EP+K   W+W  W  LP    LFW L  + + G++PF  D
Sbjct:   53 GETWEECAQRETWEEAALHLKNVHFASVVNS-FIEK-ENYHYVTILMKGEVDVTHDSEPKNVEPEKNESWEWVPWEELPPLDQLFWGLRCLKEQGYDPFKED 152          
BLAST of CX300478 vs. ExPASy Swiss-Prot
Match: NUD15_MOUSE (Probable 7,8-dihydro-8-oxoguanine triphosphatase NUDT15 OS=Mus musculus GN=Nudt15 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.928e-13
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  196 GESFEECAARELKEETGLDIEKIEFLTVTNSVFLENPKPSHYVVIFLRAAL-ADPLQEPQNLEPDKCHGWDWYDWNNLP--QPLFWPLEKMVQSGFNPFPID 492
            GE++EECA RE  EE GL ++ + F +V NS F+E  +  HYV I ++  +      EP+N+EP+K   W+W  W   P    LFW L  + + G++PF  D
Sbjct:   52 GETWEECAQRETWEEAGLHLKNVCFASVVNS-FVEK-ENYHYVTILMKGEVDMTHDSEPRNMEPEKNESWEWVPWEEFPPLDQLFWALRCLKEQGYDPFKED 151          
The following BLAST results are available for this feature:
BLAST of CX300478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NUDT1_ARATH2.671e-3972.92Nudix hydrolase 1 OS=Arabidopsis thaliana GN=NUDT1... [more]
NUD15_HUMAN1.130e-1339.22Probable 7,8-dihydro-8-oxoguanine triphosphatase N... [more]
NUD15_MOUSE1.928e-1339.22Probable 7,8-dihydro-8-oxoguanine triphosphatase N... [more]
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Properties
Property NameValue
Genbank descriptionC07010F09SK SaltLeaf1 Citrus clementina cDNA clone C07010F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300478 ID=CX300478; Name=CX300478; organism=Citrus clementina; type=EST; length=629bp
TTCCCGGCGGCCACCTCGAGTTTGGATTGAATAATGATATAGTCAGTATT
CACGAGTTCCTAAAGGATTAGCATAAAGAAGAATTTATTCCCTTTCTTGA
TAGAATTCCCATCAAATAAGGCTATCAAGACGGAATAAACTAGAAGATCC
ATTGTATATTTGAGTGTTTTCGGTACTTGAACAACAACAAATTAAGGGGA
GAGCTTTGAGGAATGTGCAGCCAGAGAATTGAAAGAGGAAACTGGGTTGG
ATATTGAGAAAATAGAGTTCTTAACCGTGACAAACAGTGTCTTCCTGGAG
AATCCTAAACCATCACACTATGTCGTCATATTTCTTCGCGCAGCCTTGGC
CGATCCCCTCCAGGAGCCCCAGAATCTTGAACCCGACAAGTGTCACGGTT
GGGATTGGTACGATTGGAACAATCTTCCTCAACCATTGTTCTGGCCTCTA
GAGAAAATGGTACAAAGTGGGTTCAATCCCTTTCCAATTGACTAGATAAT
TTGATATTAGAGATTGCTTCTGTTGCTACATTGTCAAGCTCATTCAACAT
TTTTATGCCATGTATTCTATATTATTACCTAGTTTTCAAATCTTACACCT
GAGAGGAATGAAAACAACGAAAACTCATT
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