CX300479

Overview
NameCX300479
Unique NameCX300479
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300479_ssr64 microsatellite CX300479_ssr64:64..81. BLAST: Citrus ESTs to Prunus persica proteins V1
CX300479_ssr80 microsatellite CX300479_ssr80:80..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX300479 vs. ExPASy Swiss-Prot
Match: PGR5_ARATH (Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana GN=PGR5 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.842e-40
Identity = 89/135 (65.93%), Postives = 107/135 (79.26%), Query Frame = 2
Query:  113 MAATSVCVAG-----LSSSFHGSWGASFANGGEEYR-MLARSVPNVRVAR----PIRMQPMMGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 487
            MAA S+   G     + +SF+G WG+S +  GE+Y+ ML+++V   + AR     IR  PMM N+NEGKG+FAP+VV+TRN++GKKRFNQ RGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA
Sbjct:    1 MAAASISAIGCNQTLIGTSFYGGWGSSIS--GEDYQTMLSKTVAPPQQARVSRKAIRAVPMMKNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 133          
The following BLAST results are available for this feature:
BLAST of CX300479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGR5_ARATH2.842e-4065.93Protein PROTON GRADIENT REGULATION 5, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionC07010F10SK SaltLeaf1 Citrus clementina cDNA clone C07010F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300479 ID=CX300479; Name=CX300479; organism=Citrus clementina; type=EST; length=595bp
CCCAGAAACCACAAACAAGCTAGCAAACCCTCTGAGCCTCCTTCACTGAA
AGCACAAGCTATTTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGCGTGTTG
AGCGTTTCAATTATGGCTGCTACATCAGTGTGTGTAGCTGGGTTATCATC
TTCGTTTCATGGAAGCTGGGGAGCTTCGTTTGCTAATGGTGGTGAAGAAT
ACAGGATGTTGGCAAGATCAGTGCCGAATGTTAGAGTGGCAAGACCCATT
AGAATGCAACCGATGATGGGGAACATTAATGAAGGCAAAGGCATTTTTGC
TCCTGTTGTTGTTCTCACTCGTAATATCATTGGCAAGAAGAGGTTCAATC
AGTTTAGAGGCAAAGCTATTGCCTTGCATTCTCAGGTAATTACTGAATTC
TGCAAATCAATAGGAGCTGATGCAAAGCAAAGGCAAGGCCTCATCCGTTT
GGCTAAGAAGAATGGAGAAAGACTTGGCTTCCTTGCATGATAAGAAAAAC
ATTTATTGTTTTGTATTGTTATAACCATGAGATGTTTTAAGTTTATAGTT
TTTTCAAGTGCTTTCTAATGTAAACATACTTTTCTTCAGCTGGGT
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