CX300480

Overview
NameCX300480
Unique NameCX300480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12493 contig Ccv1_Contig12493:601..1098. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 6.360e-59
Identity = 103/108 (95.37%), Postives = 107/108 (99.07%), Query Frame = 2 
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            GDYA+VISHNPDN TTR+KLPSGAKKIVPSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:  131 GDYAIVISHNPDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238
[Close]
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 3.156e-58
Identity = 101/108 (93.52%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            GDYA+VI+HNPDNDT+RIKLPSG+KKIVPSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG+KVGLI
Sbjct:  131 GDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLI 238
[Close]
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 2.046e-57
Identity = 101/108 (93.52%), Postives = 107/108 (99.07%), Query Frame = 2 
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            GDYA+VI+HNPD+DTTRIKLPSG+KKIVPSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRN WPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:  131 GDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238
[Close]
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.732e-56
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 2 
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G YA+VISHNPDN TTRIKLPSG+KKIVPSGCR MIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV RDAPPGQKVGLI
Sbjct:  131 GAYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRRMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVARDAPPGQKVGLI 238
[Close]
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.087e-50
Identity = 89/108 (82.41%), Postives = 99/108 (91.67%), Query Frame = 2 
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            GDYA+VI+HNP+++TTR+KLPSG+KKI+PS CRAMIGQVAGGGRTEKP LKAGNAYHK++ KRNCWP VRGVAMNPVEHPHGGGNHQHIGHASTVRRD   G KVG I
Sbjct:  132 GDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQI 239
[Close]
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 2.507e-47
Identity = 85/108 (78.70%), Postives = 96/108 (88.89%), Query Frame = 2 
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G+YA VI+HNPD   TR+KLPSGAKK++PS  RAMIG VAGGGR +KP+LKAG AYHK++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:  131 GNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMIGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238
[Close]
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.772e-46
Identity = 83/108 (76.85%), Postives = 95/108 (87.96%), Query Frame = 2 
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G+YA VI+HNPD   TR+KLPSGAKK++PS  RAM+G VAGGGR +KP+LKAG AY K++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:  131 GNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238
[Close]
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.346e-45
Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 2 
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G+YA VI+HNPD   TRI+LPSGAKK+V S  RAMIG VAGGGRT+KPLLKAG +YHK++ KRN WP+VRGVAMNPVEHPHGGGNHQHIGH STVRRDA  G+KVGLI
Sbjct:  131 GNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLI 238
[Close]
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 4.425e-44
Identity = 78/108 (72.22%), Postives = 93/108 (86.11%), Query Frame = 2 
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G+YA VISHNP+   TR+KLPSG+KK++ S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  131 GNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 4.425e-44
Identity = 78/108 (72.22%), Postives = 93/108 (86.11%), Query Frame = 2 
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G+YA VISHNP+   TR+KLPSG+KK++ S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  131 GNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
The following BLAST results are available for this feature:
BLAST of CX300480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RL8_SOLLC6.360e-5995.3760S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL83_ARATH3.156e-5893.5260S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL81_ARATH2.046e-5793.5260S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL8_TOBAC1.732e-5692.5960S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL82_ARATH1.087e-5082.4160S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_ANOGA2.507e-4778.7060S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_AEDAL2.772e-4676.8560S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL8_CAEEL2.346e-4577.7860S ribosomal protein L8 OS=Caenorhabditis elegans... [more]
RL8_XENTR4.425e-4472.2260S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]
RL8_XENLA4.425e-4472.2260S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]

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Properties
Property NameValue
Genbank descriptionC07010F11SK SaltLeaf1 Citrus clementina cDNA clone C07010F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300480 ID=CX300480; Name=CX300480; organism=Citrus clementina; type=EST; length=535bp
GGGTGATTATGCTGTTGTCATTAGTCATAATCCTGATAACGACACTACTA
GGATTAAGCTCCCATCTGGTGCCAAGAAGATTGTGCCGAGTGGGTGCCGT
GCTATGATTGGTCAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCATTGTT
GAAGGCAGGAAATGCTTATCACAAGTTCAGGGTGAAGAGGAACTGCTGGC
CCAAGGTCCGTGGTGTTGCCATGAACCCTGTTGAGCATCCCCATGGTGGT
GGTAACCACCAGCACATTGGGCATGCAAGTACGGTTCGCCGTGATGCACC
CCCTGGCCAAAAGGTTGGTCTTATTGCTGCTAGGAGGACTGGTCGTCTTA
GAGGACAAGCAGCTGCCACTGCTGCAAAGGCTGACAAGGCTTAAAGTTTC
GCTTGAGCTCATTTTAATTTTGTTTTGTGCTGGTGAACATCTTCATATGG
TTGTTATCTGTTAGCATTAGATTTTGGTTTGCAATTTTGGAAGGTTACTA
ACTTCTTGTGATTAGTACATTGAAAGTGAGAGTAT
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