CX300482

Overview
NameCX300482
Unique NameCX300482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length382
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig64 contig Ccv1_Contig64:262..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300482 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.416e-25
Identity = 54/71 (76.06%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 RKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 213
            RK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT           V+NTSALAQ
Sbjct:   66 RKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136          
BLAST of CX300482 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.383e-25
Identity = 53/71 (74.65%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 RKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 213
            RK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   68 RKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138          
BLAST of CX300482 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.383e-25
Identity = 53/71 (74.65%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 RKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 213
            RK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   68 RKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138          
BLAST of CX300482 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.557e-24
Identity = 52/71 (73.24%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 RKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 213
            RK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   70 RKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140          
BLAST of CX300482 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.951e-24
Identity = 51/71 (71.83%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 RKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 213
            RK  GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAVT           VYNTSALAQ
Sbjct:   70 RKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140          
BLAST of CX300482 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.773e-24
Identity = 52/71 (73.24%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 RKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 213
            RK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   71 RKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141          
BLAST of CX300482 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.241e-21
Identity = 48/70 (68.57%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 RKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALA 210
            R AKGKGVYQF DKYGANVDGYSPIY   +WSPSGDVY GG TGL +WAVT           VY+TSALA
Sbjct:   68 RVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137          
The following BLAST results are available for this feature:
BLAST of CX300482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBR_TOBAC2.416e-2576.06Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU5.383e-2574.65Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC5.383e-2574.65Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_ARATH4.557e-2473.24Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL5.951e-2471.83Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM7.773e-2473.24Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_HORVU1.241e-2168.57Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC07010G01SK SaltLeaf1 Citrus clementina cDNA clone C07010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300482 ID=CX300482; Name=CX300482; organism=Citrus clementina; type=EST; length=382bp
AGGAAGGCTAAGGGGAAAGGTGTTTACCAATTTGTTGACAAGTACGGTGC
CAATGTTGATGGATACAGTCCTATCTACAATGAGAACGACTGGTCTCCCA
GTGGTGATGTCTATACTGGTGGTGCAACTGGCTTGGCAATCTGGGCTGTT
ACTCTTGCCGGTCTTCTTGCAGGAGGAGCACTTCTCGTCTACAACACAAG
TGCTTTGGCACAGTAGATGAATTTCAATCAATGTTACATTATTATCTCTA
TTTTGTATAACTTGTCAATGTTGCTGTTAAATGTACCTTCCACAGCTACT
TCGTGTATCTATTTTGTGTAATGTTTTGGGTGGATTTAAATTGAGACATA
TAGCCATCTATAATTAAAAAAAAAAAAAAAAA
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