CX300493

Overview
NameCX300493
Unique NameCX300493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length391
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig840 contig Ccv1_Contig840:1..391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: BAS1_ORYSJ (2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 162
            NLAIGRSVDET+RTLQALQYVQ+NPDEVCPAGWKPGDKSMKPDPK SKEYFAAI
Sbjct:  208 NLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKGSKEYFAAI 261          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: BAS1B_ARATH (2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 162
            NL IGRSVDET+RTLQALQYVQENPDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct:  218 NLGIGRSVDETMRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 271          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: BAS1A_ARATH (2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabidopsis thaliana GN=BAS1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.882e-24
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 162
            NL IGRSVDET+RTLQALQY+QENPDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct:  213 NLGIGRSVDETMRTLQALQYIQENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 266          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: BAS1_SPIOL (2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinacia oleracea GN=BAS1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.950e-21
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 162
            NL IGRSVDET+RTLQALQY   NPDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct:  213 NLGIGRSVDETMRTLQALQYTG-NPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 265          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: BAS1_HORVU (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare GN=BAS1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.038e-20
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 162
            NL IGRSVDETLRTLQALQYV++ PDEVCPAGWKPG+KSMKPDPK SKEYFAAI
Sbjct:  158 NLGIGRSVDETLRTLQALQYVKK-PDEVCPAGWKPGEKSMKPDPKGSKEYFAAI 210          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: BAS1_WHEAT (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Triticum aestivum GN=TSA PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.021e-20
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 162
            NL IGRSVDETLRTL+ALQYV++ PDEVCPAGWKPG+KSMKPDPK SKEYFAAI
Sbjct:  158 NLGIGRSVDETLRTLRALQYVKK-PDEVCPAGWKPGEKSMKPDPKGSKEYFAAI 210          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: YCF42_PORYE (Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.227e-18
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 159
            NL  GRSV+ETLR LQA+QYVQ +PDEVCPA WKPGDK+M PDP  SK YFAA
Sbjct:  146 NLEFGRSVEETLRVLQAIQYVQSHPDEVCPANWKPGDKTMNPDPIKSKNYFAA 198          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: YCF42_PORPU (Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.394e-17
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 159
            NL  GRSV+ETLR LQA+QYVQ +PDEVCPA WKPGD++M PDP  SK YFAA
Sbjct:  146 NLEFGRSVEETLRVLQAIQYVQAHPDEVCPANWKPGDRTMNPDPIKSKNYFAA 198          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: Y755_SYNY3 (Putative peroxiredoxin sll0755 OS=Synechocystis sp. (strain PCC 6803) GN=sll0755 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.606e-13
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI*E 168
            NL+ GRSVDETLR L+A+++VQ +P+EVCP  W+ GDK+M PDP+ +K YF  + E
Sbjct:  144 NLSFGRSVDETLRVLKAIRHVQSHPNEVCPVDWQEGDKTMIPDPEKAKTYFETVAE 199          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: PRDX1_MYOLU (Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.503e-11
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 156
            +L +GRSVDETLR +QA Q+  ++  EVCPAGWKPG  ++KPD + SKEYF+
Sbjct:  146 DLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPGSDTIKPDVQKSKEYFS 196          
The following BLAST results are available for this feature:
BLAST of CX300493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
BAS1_ORYSJ4.504e-2494.442-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza s... [more]
BAS1B_ARATH4.504e-2492.592-Cys peroxiredoxin BAS1-like, chloroplastic OS=Ar... [more]
BAS1A_ARATH5.882e-2490.742-Cys peroxiredoxin BAS1, chloroplastic OS=Arabido... [more]
BAS1_SPIOL7.950e-2187.042-Cys peroxiredoxin BAS1, chloroplastic OS=Spinaci... [more]
BAS1_HORVU1.038e-2088.892-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_WHEAT3.021e-2087.042-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
YCF42_PORYE8.227e-1875.47Putative peroxiredoxin ycf42 OS=Porphyra yezoensis... [more]
YCF42_PORPU2.394e-1773.58Putative peroxiredoxin ycf42 OS=Porphyra purpurea ... [more]
Y755_SYNY31.606e-1357.14Putative peroxiredoxin sll0755 OS=Synechocystis sp... [more]
PRDX1_MYOLU1.503e-1159.62Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC07010H01SK SaltLeaf1 Citrus clementina cDNA clone C07010H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300493 ID=CX300493; Name=CX300493; organism=Citrus clementina; type=EST; length=391bp
AACCTTGCCATTGGTAGGAGTGTTGACGAGACACTGAGAACACTTCAGGC
CTTGCAGTACGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCAGGATGGA
AGCCCGGGGACAAATCCATGAAGCCAGACCCAAAACTCAGCAAGGAGTAC
TTTGCAGCTATATAAGAGGGGTTAGCATTGGAACCTCGTATGCATATCTA
TGTCTATTAGGGAGGTGTAGATGAGTTTTGTTTTTCCATGTAATGTGATT
TTGCTACTTACTGTTAGTTTTGCGGAGCAGCCTGTGGGGAATAAATGCAT
TGGACTGGATTTGTCCATCTCTTTACTTCCTTTGTAATGCAGACACAACA
CAATCTCTTGTTATTGTCCTCTTCAAAAAAAAAAAAAAAAA
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