CX300496

Overview
NameCX300496
Unique NameCX300496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300496_ssr503 microsatellite CX300496_ssr503:503..512. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX300496 vs. ExPASy Swiss-Prot
Match: P2A01_ARATH (Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana GN=PP2A1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.287e-26
Identity = 58/128 (45.31%), Postives = 83/128 (64.84%), Query Frame = 3
Query:    3 DENIEVVKLSHVCWMDVRGKFKISELSPGVMYEIVYVVKLTNAAFGWEAPVSLKLSLP-ADGKVQNRQVSLLEKPRGEWFELCVGNFLTETNNDGSESTAEVFFDFFEH-GGHWKSGLIIKAAVLRPK 380
            +EN+E V L +VCW+D+ GKF    L+PG++YE+V+ VKL + A+GW+ PV+LKL LP    K Q ++VSL E PR +W ++ VG F+ E +  G     E+ F  +EH  G WK GL +K   +RPK
Sbjct:  123 NENVEAVGLKNVCWLDITGKFDTRNLTPGIVYEVVFKVKLEDPAYGWDTPVNLKLVLPNGKEKPQEKKVSLRELPRYKWVDVRVGEFVPEKSAAG-----EITFSMYEHAAGVWKKGLSLKGVAIRPK 245          
BLAST of CX300496 vs. ExPASy Swiss-Prot
Match: P2A04_ARATH (Uncharacterized protein PHLOEM PROTEIN 2-LIKE A4 OS=Arabidopsis thaliana GN=PP2A4 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.075e-19
Identity = 53/126 (42.06%), Postives = 70/126 (55.56%), Query Frame = 3
Query:   12 IEVVKLSHVCWMDVRGKFKISELSPGVMYEIVYVVKLTNAAFGWEAPVSLKLSLPADGK--VQNRQVSLLEKPRGEWFELCVGNFLTETNNDGSESTAEVFFDFFE-HGGHWKSGLIIKAAVLRPK 380
            ++   L  VCW+DV GKF   EL+    YE+VYVVKL + A GW  PV+LKL+LP DGK   Q R + L E     W ++  G F+T  +N G     E+ F  +E     WK GL +K   +RPK
Sbjct:   45 VDAAVLEAVCWLDVNGKFDTRELTLETTYEVVYVVKLEDTASGWNIPVNLKLTLP-DGKKRPQERSMCLKEHIGKRWIDISAGEFVTSPDNAG-----EISFSMYETKSCCWKRGLFVKCVEIRPK 164          
BLAST of CX300496 vs. ExPASy Swiss-Prot
Match: P2A02_ARATH (Protein PHLOEM PROTEIN 2-LIKE A2 OS=Arabidopsis thaliana GN=PP2A2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.250e-17
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 3
Query:    3 DENIEVVKLSHVCWMDVRGKFKISELSPGVMYEIVYVVKLTNAAFGWEAPVSLKLSLP-ADGKVQNRQVSLLEKPRGEWFELCVGNFLTETNNDGSESTAEVFFDFFE-HGGHWKSGLIIKAAVLRPK 380
            D   EV K+  V W++V GKF+  +L+P  +YE+V+VVKL ++A GW+  V+ KL LP  + K +   V+LLE  R +W E+  G F+    +     + ++ F   E     WKSGLI+K   +RPK
Sbjct:   72 DVRTEVAKMERVAWLEVVGKFETEKLTPNSLYEVVFVVKLIDSAKGWDFRVNFKLVLPTGETKERRENVNLLE--RNKWVEIPAGEFMISPEH----LSGKIEFSMLEVKSDQWKSGLIVKGVAIRPK 193          
BLAST of CX300496 vs. ExPASy Swiss-Prot
Match: P2A05_ARATH (Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.860e-16
Identity = 49/125 (39.20%), Postives = 65/125 (52.00%), Query Frame = 3
Query:   12 IEVVKLSHVCWMDVRGKFKISELSPGVMYEIVYVVKLTNAAFGWEAPVSLKLSLPAD-GKVQNRQVSLLEKPRGEWFELCVGNFLTETNNDGSESTAEVFFDFFEHGGH-WKSGLIIKAAVLRPK 380
            +E+  L    W+DV GKF    L+P   YE+V+VVKL    F WE  V LKL LP    K Q + V + +    +W ++ VG F T   N G     E+ F  +EH    WKSGL +K   +RPK
Sbjct:  292 MEIAFLKSASWLDVAGKFDTRYLTPRTRYEVVFVVKL-EYTFEWETLVKLKLDLPNTWEKPQEQSVDMFDYISDQWLDIPVGEFTTSKKNVG-----EISFAMYEHECQLWKSGLFVKGVTIRPK 410          
BLAST of CX300496 vs. ExPASy Swiss-Prot
Match: P2A07_ARATH (Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis thaliana GN=PP2A7 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 42/129 (32.56%), Postives = 67/129 (51.94%), Query Frame = 3
Query:    3 DENIEVVKLSHVCWMDVRGKFKISELSPGVMYEIVYVVKLTNAAFGWEAPVSLKLS-LPADG--KVQNRQVSLLEKPRGEWFELCVGNFLTETNNDGSESTAEVFFDFFEH-GGHWKSGLIIKAAVLRP 377
            D  IEV  L+ V W+ + G F    L+PG  YE+V++V L + + GWE PV+L L  +  DG   +Q R+ SL       W ++  G  +    N    + A++ F  +++     KSGL++K   +RP
Sbjct:  206 DAAIEVAMLNEVHWLHMSGNFHTRNLTPGTKYEVVFLVSLDDTSSGWEQPVNLNLKVINPDGTESLQERETSLECHIGENWVDIQAGVLVAPPRN----AAAKMTFTMYQYVTSDRKSGLVVKGVAIRP 330          
BLAST of CX300496 vs. ExPASy Swiss-Prot
Match: P2A06_ARATH (Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11
Identity = 40/126 (31.75%), Postives = 63/126 (50.00%), Query Frame = 3
Query:   12 IEVVKLSHVCWMDVRGKFKISELSPGVMYEIVYVVKLTNAAFGWEAPVSLKLSL---PADGKVQNRQVSLLEKPRGEWFELCVGNFLTETNNDGSESTAEVFFDFFEHGGHW-KSGLIIKAAVLRP 377
            IE+  L+ V W+ + G      L+PG  YE V+VVKL N A GWE PV+LKL +     D    +R  +L +     W ++  G F+         + A + F  +++   + K GL++K   +RP
Sbjct:  269 IEIATLNKVYWLKIVGTITTENLTPGAKYEAVFVVKLENNASGWEQPVNLKLKVVQHDGDDDRVDRTENLNDYIGQNWVDILAGVFVVPPKT----TPATIIFTMYQYEDKYKKKGLVVKGVAIRP 390          
The following BLAST results are available for this feature:
BLAST of CX300496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
P2A01_ARATH4.287e-2645.31Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis th... [more]
P2A04_ARATH5.075e-1942.06Uncharacterized protein PHLOEM PROTEIN 2-LIKE A4 O... [more]
P2A02_ARATH1.250e-1738.28Protein PHLOEM PROTEIN 2-LIKE A2 OS=Arabidopsis th... [more]
P2A05_ARATH6.860e-1639.20Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis th... [more]
P2A07_ARATH1.339e-1132.56Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 O... [more]
P2A06_ARATH1.748e-1131.75Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC07010H04SK SaltLeaf1 Citrus clementina cDNA clone C07010H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300496 ID=CX300496; Name=CX300496; organism=Citrus clementina; type=EST; length=620bp
GTGATGAAAACATAGAAGTGGTGAAACTAAGCCACGTATGCTGGATGGAT
GTAAGAGGCAAGTTCAAGATATCGGAACTGTCCCCGGGGGTTATGTATGA
GATCGTGTACGTGGTGAAGTTGACAAATGCAGCATTTGGATGGGAAGCAC
CGGTCAGCCTCAAGCTCTCACTGCCTGCCGATGGGAAAGTGCAGAATCGC
CAAGTGAGCCTCTTGGAGAAGCCCAGAGGAGAATGGTTTGAGCTCTGCGT
CGGCAACTTCTTAACGGAGACTAATAATGATGGATCCGAAAGTACGGCTG
AAGTTTTCTTTGATTTTTTTGAGCATGGAGGCCACTGGAAATCTGGACTC
ATTATTAAAGCTGCCGTTCTTAGGCCAAAAATTAACTGACAACTTTCATC
GCGCTTCTTTCTACTCGTGCACTTGCTTGTGGCCGGCCGCCTGCCATGTT
TAAGTTTTCATTTTTTTTTTCCTCCTACGCAATCTAGTTCTAATAGAATC
CTTATATATATATCTGTTTTTCATCCGTAACATCTGAATGTAAACTACGA
AAATTAGTGATAGATGTATGAAATATTTACGTTTTGATTCATTTCTTTAG
ATTAAATTTACTCCAAATTT
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