CX300497

Overview
NameCX300497
Unique NameCX300497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length392
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig64 contig Ccv1_Contig64:22..413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300497 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.808e-42
Identity = 82/107 (76.64%), Postives = 93/107 (86.92%), Query Frame = 1
Query:   79 KPAPFTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAV 390
            KPAPF+V K+A +GLPSLA++S  F++ A G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAV
Sbjct:    9 KPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAV 115          
BLAST of CX300497 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.667e-42
Identity = 85/107 (79.44%), Postives = 93/107 (86.92%), Query Frame = 1
Query:   79 KPAPFTVGKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAV 390
            KPA FTV K+AARGLPSL  A+ SFKIVA G  KIKTDKP+GING MDLR+G+DASGRK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAV
Sbjct:   13 KPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAV 119          
BLAST of CX300497 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.541e-40
Identity = 81/108 (75.00%), Postives = 92/108 (85.19%), Query Frame = 1
Query:   79 KPAPFTVGKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAV 390
            KPA FTV K +ARGLPSL +   +SF+IVA G  KIKTDKP+G+NG MDLR+G+DASGRK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAV
Sbjct:   13 KPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAV 120          
BLAST of CX300497 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.225e-39
Identity = 77/103 (74.76%), Postives = 90/103 (87.38%), Query Frame = 1
Query:   91 FTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAV 390
            FT+ K++ +GLPSLA++S  FK+VA G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAV
Sbjct:   15 FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAV 117          
BLAST of CX300497 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.442e-38
Identity = 76/103 (73.79%), Postives = 88/103 (85.44%), Query Frame = 1
Query:   91 FTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAV 390
            FT+ K + +GLPSL ++S  FK+VA G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAV
Sbjct:   15 FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAV 117          
BLAST of CX300497 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.546e-35
Identity = 74/108 (68.52%), Postives = 86/108 (79.63%), Query Frame = 1
Query:   79 KPAPFTVG-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAV 390
            KP+ F V  KSA +GLPSL+++S  F + A G  KIK DKP GI GGM LR+G+D+SGRK  GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAV
Sbjct:   12 KPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAV 119          
BLAST of CX300497 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.932e-29
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 1
Query:  103 KSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAV 390
            +S   G+   A+ S  IVAK  K ++T +PYG  GG+  +EG+DASGR AKGKGVYQF DKYGANVDGYSPIY   +WSPSGDVY GG TGL +WAV
Sbjct:   21 RSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAV 117          
The following BLAST results are available for this feature:
BLAST of CX300497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBR_TOBAC2.808e-4276.64Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_ARATH3.667e-4279.44Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM1.541e-4075.00Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU2.225e-3974.76Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC1.442e-3873.79Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL2.546e-3568.52Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_HORVU7.932e-2962.89Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC07010H06SK SaltLeaf1 Citrus clementina cDNA clone C07010H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300497 ID=CX300497; Name=CX300497; organism=Citrus clementina; type=EST; length=392bp
AGAAAATTAACAAAAACAAAACAGGAGAGCACAGCAAAGCAAATGGCAGC
CTCAGTGATGGCTTCTTCGTTGAGCCTGAAACCAGCTCCTTTCACTGTGG
GGAAATCAGCAGCGAGAGGCCTTCCCTCTCTTGCTAAAACTTCATTCAAA
ATTGTGGCTAAAGGCGGCAAGATCAAAACCGACAAACCCTATGGAATAAA
TGGTGGTATGGATTTGAGGGAAGGTCTTGATGCATCCGGCAGGAAGGCTA
AGGGGAAAGGTGTTTACCAATTTGTTGACAAATACGGTGCCAATGTTGAT
GGATACAGTCCTATCTACAACGAGAATGACTGGTCTCCCAGTGGTGATGT
CTATACTGGTGGTGCAACTGGCTTGGCAATCTGGGCTGTTAC
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