CX300503 | Citrus Genome Database

Overview


Name	CX300503
Unique Name	CX300503
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	609

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX300503 vs. ExPASy Swiss-Prot
Match: NDUS1_ARATH (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=EMB1467 PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.006e-52
Identity = 109/173 (63.01%), Postives = 128/173 (73.99%), Query Frame = 1

Query:   37 SIESAKFVYLTGCR*CGLGKASK*CVCCLSWAIMVTMVSIAPM*FSQHHAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLKK 555
            ++ESAKFVYL G     + K  K              V  A +      AF+EKEGTYENTEG TQQT+PAVPTVGDARDDWKI+RALSEV+G++LPY++I G+RSRI++VAPNL+H DEREPA  GPSLKPE K  M  TPF + VENFYMT+SITRASK MAQCSA+LLKK
Sbjct:  574 ALESAKFVYLMGADDVNVDKIPKDAFVVYQGHHGDKAVYRANV-ILPASAFTEKEGTYENTEGFTQQTVPAVPTVGDARDDWKIVRALSEVSGVKLPYNSIEGVRSRIKSVAPNLVHTDEREPAAFGPSLKPECKEAMSTTPFQTVVENFYMTNSITRASKIMAQCSAVLLKK 745

[Close]

BLAST of CX300503 vs. ExPASy Swiss-Prot
Match: NDUS1_SOLTU (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.203e-50
Identity = 112/197 (56.85%), Postives = 129/197 (65.48%), Query Frame = 1

Query:   13 DLCLSPRNS--IESAKFVYLTGCR*CGLGKASK*CVCCLSWAIMVTMVSIAPM*FSQHH---------------AFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLK 552
            DL L P +   IESAKFVYL G     L K                +   A + +  HH               AF+EKEG YENTEGC Q TLPAVPTVGDARDDWKI+RALSEVAG+ LPYD++G IRSRI+TVAPNLL VDER+PAT   SL+PE+  ++  TPF  AVENFYMTD+ITRASK MAQCSA+L K
Sbjct:  558 DLGLVPESDKCIESAKFVYLMGADDVNLDK----------------LPDDAFVVYQGHHGDRGVYRANVILPASAFTEKEGIYENTEGCAQITLPAVPTVGDARDDWKIVRALSEVAGVGLPYDSLGAIRSRIKTVAPNLLEVDERQPATFSTSLRPEVSQKVSATPFTPAVENFYMTDAITRASKIMAQCSALLKK 738

[Close]

BLAST of CX300503 vs. ExPASy Swiss-Prot
Match: NDUS1_BOVIN (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Bos taurus GN=NDUFS1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.155e-27
Identity = 61/123 (49.59%), Postives = 81/123 (65.85%), Query Frame = 1

Query:  184 AFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATL---GPSLKPEIKSEM---DLTPFGSAVENFYMTDSITRASKTMAQC 534
            A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AGM LPYDT+  +R+R+  V+PNL+  D+ E A        L   +  ++    L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  588 AYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDVEGANYFQQASELSKLVNQQLLADPLVPPQLTIKDFYMTDSISRASQTMAKC 710

HSP 2 Score: 27.335 bits (59), Expect = 1.155e-27
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  129 GHHGDHGVYRANVILPASCF 188
            GHHGD G   A+VILP + +
Sbjct:  570 GHHGDVGAPIADVILPGAAY 589

HSP 3 Score: 23.8682 bits (50), Expect = 1.155e-27
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 2

Query:   68 LGADD--VDLEKLPNDAFVVYHG 130
            LGAD   +  + LP D F+VY G
Sbjct:  548 LGADGGCITRQDLPKDCFIVYQG 570

[Close]

BLAST of CX300503 vs. ExPASy Swiss-Prot
Match: NDUS1_PANTR (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pan troglodytes GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.500e-27
Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = 1

Query:  184 AFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 534
            A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AGM LPYDT+  +R+R+  V+PNL+  D+ E A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  588 AYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710

HSP 2 Score: 27.7202 bits (60), Expect = 1.500e-27
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 3

Query:  117 LFIMGHHGDHGVYRANVILPASCF 188
            +   GHHGD G   A+VILP + +
Sbjct:  566 IIYQGHHGDVGAPIADVILPGAAY 589

HSP 3 Score: 23.483 bits (49), Expect = 1.500e-27
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2

Query:   68 LGADD--VDLEKLPNDAFVVYHG 130
            LGAD   +  + LP D F++Y G
Sbjct:  548 LGADGGCITRQDLPKDCFIIYQG 570

[Close]

BLAST of CX300503 vs. ExPASy Swiss-Prot
Match: NDUS1_HUMAN (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Homo sapiens GN=NDUFS1 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.500e-27
Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = 1

Query:  184 AFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 534
            A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AGM LPYDT+  +R+R+  V+PNL+  D+ E A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  588 AYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710

HSP 2 Score: 27.7202 bits (60), Expect = 1.500e-27
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 3

Query:  117 LFIMGHHGDHGVYRANVILPASCF 188
            +   GHHGD G   A+VILP + +
Sbjct:  566 IIYQGHHGDVGAPIADVILPGAAY 589

HSP 3 Score: 23.483 bits (49), Expect = 1.500e-27
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2

Query:   68 LGADD--VDLEKLPNDAFVVYHG 130
            LGAD   +  + LP D F++Y G
Sbjct:  548 LGADGGCITRQDLPKDCFIIYQG 570

[Close]

BLAST of CX300503 vs. ExPASy Swiss-Prot
Match: NDUS1_GORGO (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.500e-27
Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = 1

Query:  184 AFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 534
            A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AGM LPYDT+  +R+R+  V+PNL+  D+ E A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  588 AYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710

HSP 2 Score: 27.7202 bits (60), Expect = 1.500e-27
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 3

Query:  117 LFIMGHHGDHGVYRANVILPASCF 188
            +   GHHGD G   A+VILP + +
Sbjct:  566 IIYQGHHGDVGAPIADVILPGAAY 589

HSP 3 Score: 23.483 bits (49), Expect = 1.500e-27
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2

Query:   68 LGADD--VDLEKLPNDAFVVYHG 130
            LGAD   +  + LP D F++Y G
Sbjct:  548 LGADGGCITRQDLPKDCFIIYQG 570

[Close]

BLAST of CX300503 vs. ExPASy Swiss-Prot
Match: NDUS1_MOUSE (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Mus musculus GN=Ndufs1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.500e-27
Identity = 59/124 (47.58%), Postives = 84/124 (67.74%), Query Frame = 1

Query:  184 AFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDE-------REPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 534
            A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AG+ LPYDT+  +R+R+  V+PNL+  D+       ++ + L   +  E+ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  588 AYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGITLPYDTLDQVRNRLEEVSPNLVRYDDIEETNYFQQASELAKLVNQEVLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710

HSP 2 Score: 28.1054 bits (61), Expect = 1.500e-27
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  129 GHHGDHGVYRANVILPASCF 188
            GHHGD G   A+VILP + +
Sbjct:  570 GHHGDVGAPMADVILPGAAY 589

HSP 3 Score: 23.8682 bits (50), Expect = 1.500e-27
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 2

Query:   68 LGADD--VDLEKLPNDAFVVYHG 130
            LGAD   +  + LP D F+VY G
Sbjct:  548 LGADGGCITRQDLPKDCFIVYQG 570

[Close]

BLAST of CX300503 vs. ExPASy Swiss-Prot
Match: NDUS1_PONPY (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo pygmaeus GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.256e-27
Identity = 60/124 (48.39%), Postives = 83/124 (66.94%), Query Frame = 1

Query:  184 AFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 534
            A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AG+ LPYDT+  +R+R+  V+PNL+  D+ E A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  588 AYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGVTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710

HSP 2 Score: 27.7202 bits (60), Expect = 4.256e-27
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 3

Query:  117 LFIMGHHGDHGVYRANVILPASCF 188
            +   GHHGD G   A+VILP + +
Sbjct:  566 IIYQGHHGDVGAPIADVILPGAAY 589

HSP 3 Score: 23.483 bits (49), Expect = 4.256e-27
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2

Query:   68 LGADD--VDLEKLPNDAFVVYHG 130
            LGAD   +  + LP D F++Y G
Sbjct:  548 LGADGGCITRQDLPKDCFIIYQG 570

[Close]

BLAST of CX300503 vs. ExPASy Swiss-Prot
Match: NDUS1_PONAB (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo abelii GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.256e-27
Identity = 60/124 (48.39%), Postives = 83/124 (66.94%), Query Frame = 1

Query:  184 AFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 534
            A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AG+ LPYDT+  +R+R+  V+PNL+  D+ E A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  588 AYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGVTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710

HSP 2 Score: 27.7202 bits (60), Expect = 4.256e-27
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 3

Query:  117 LFIMGHHGDHGVYRANVILPASCF 188
            +   GHHGD G   A+VILP + +
Sbjct:  566 IIYQGHHGDVGAPIADVILPGAAY 589

HSP 3 Score: 23.483 bits (49), Expect = 4.256e-27
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2

Query:   68 LGADD--VDLEKLPNDAFVVYHG 130
            LGAD   +  + LP D F++Y G
Sbjct:  548 LGADGGCITRQDLPKDCFIIYQG 570

[Close]

BLAST of CX300503 vs. ExPASy Swiss-Prot
Match: NDUS1_MACFA (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Macaca fascicularis GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.256e-27
Identity = 60/124 (48.39%), Postives = 83/124 (66.94%), Query Frame = 1

Query:  184 AFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 534
            A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AG+ LPYDT+  +R+R+  V+PNL+  D+ E A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  588 AYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGITLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710

HSP 2 Score: 27.7202 bits (60), Expect = 4.256e-27
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 3

Query:  117 LFIMGHHGDHGVYRANVILPASCF 188
            +   GHHGD G   A+VILP + +
Sbjct:  566 IIYQGHHGDVGAPIADVILPGAAY 589

HSP 3 Score: 23.483 bits (49), Expect = 4.256e-27
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2

Query:   68 LGADD--VDLEKLPNDAFVVYHG 130
            LGAD   +  + LP D F++Y G
Sbjct:  548 LGADGGCITRQDLPKDCFIIYQG 570

The following BLAST results are available for this feature:

BLAST of CX300503 vs. ExPASy Swiss-Prot

BLAST of CX300503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16


Match Name	E-value	Identity	Description
NDUS1_ARATH	2.006e-52	63.01	NADH-ubiquinone oxidoreductase 75 kDa subunit, mit...	[more]
NDUS1_SOLTU	3.203e-50	56.85	NADH-ubiquinone oxidoreductase 75 kDa subunit, mit...	[more]
NDUS1_BOVIN	1.155e-27	49.59	NADH-ubiquinone oxidoreductase 75 kDa subunit, mit...	[more]
NDUS1_PANTR	1.500e-27	49.19	NADH-ubiquinone oxidoreductase 75 kDa subunit, mit...	[more]
NDUS1_HUMAN	1.500e-27	49.19	NADH-ubiquinone oxidoreductase 75 kDa subunit, mit...	[more]
NDUS1_GORGO	1.500e-27	49.19	NADH-ubiquinone oxidoreductase 75 kDa subunit, mit...	[more]
NDUS1_MOUSE	1.500e-27	47.58	NADH-ubiquinone oxidoreductase 75 kDa subunit, mit...	[more]
NDUS1_PONPY	4.256e-27	48.39	NADH-ubiquinone oxidoreductase 75 kDa subunit, mit...	[more]
NDUS1_PONAB	4.256e-27	48.39	NADH-ubiquinone oxidoreductase 75 kDa subunit, mit...	[more]
NDUS1_MACFA	4.256e-27	48.39	NADH-ubiquinone oxidoreductase 75 kDa subunit, mit...	[more]

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Properties


Property Name	Value
Genbank description	C07011A01SK SaltLeaf1 Citrus clementina cDNA clone C07011A01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300503 ID=CX300503; Name=CX300503; organism=Citrus clementina; type=EST; length=609bp
CCCTGGACCTCGGACTTGTGCCTGAGTCCACGCAACAGCATTGAGTCTGC
AAAGTTTGTCTATCTCACTGGGTGCCGATGATGTGGACTTGGAAAAGCTT
CCAAATGATGCGTTTGTTGTTTATCATGGGCCATCATGGTGACCATGGTG
TCTATCGCGCCAATGTAATTCTCCCAGCATCATGCTTTTAGCGAGAAGGA
AGGGACTTACGAAAATACTGAAGGTTGCACTCAACAGACGTTGCCTGCAG
TTCCAACTGTTGGTGATGCCAGAGATGATTGGAAGATAATTCGGGCACTT
TCTGAGGTGGCAGGGATGCGTTTACCTTATGATACAATTGGAGGCATTCG
ATCCCGGATCAGGACAGTGGCACCAAATCTCTTGCATGTGGATGAGAGAG
AACCTGCTACTCTTGGGCCTTCTTTGAAGCCCGAGATCAAAAGTGAGATG
GATTTGACTCCTTTCGGTAGTGCAGTTGAGAATTTTTATATGACTGATTC
TATTACCAGAGCATCAAAGACCATGGCCCAATGCAGTGCAATGCTGTTGA
AGAAGTGAGTGATTGGCTTTGCGGATTACTCAAATAATTGTGTCAAATTT
TATCTTTTT