CX300506

Overview
NameCX300506
Unique NameCX300506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length258
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14522 contig Ccv1_Contig14522:63..319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300506 vs. ExPASy Swiss-Prot
Match: UBL5_ARATH (Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.065e-32
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 2
Query:    2 VVLNDRLGM*VRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYS 211
            VVLNDRLG  VRVKCN+DDTIGDLKKLVAAQTGTRA+KIRIQKWYNIYKDHITLKDYEIHDGMGLELYY+
Sbjct:    4 VVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYN 73          
BLAST of CX300506 vs. ExPASy Swiss-Prot
Match: UBL5_PSAOB (Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.872e-25
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 2
Query:    2 VVLNDRLGM*VRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 208
            VV NDRLG  VRVKCN DDTIGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEIHDGM LELYY
Sbjct:    4 VVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CX300506 vs. ExPASy Swiss-Prot
Match: UBL5_MOUSE (Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.872e-25
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 2
Query:    2 VVLNDRLGM*VRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 208
            VV NDRLG  VRVKCN DDTIGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEIHDGM LELYY
Sbjct:    4 VVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CX300506 vs. ExPASy Swiss-Prot
Match: UBL5_MESAU (Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.872e-25
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 2
Query:    2 VVLNDRLGM*VRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 208
            VV NDRLG  VRVKCN DDTIGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEIHDGM LELYY
Sbjct:    4 VVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CX300506 vs. ExPASy Swiss-Prot
Match: UBL5_HUMAN (Ubiquitin-like protein 5 OS=Homo sapiens GN=UBL5 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.872e-25
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 2
Query:    2 VVLNDRLGM*VRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 208
            VV NDRLG  VRVKCN DDTIGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEIHDGM LELYY
Sbjct:    4 VVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CX300506 vs. ExPASy Swiss-Prot
Match: UBL5_BOVIN (Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.872e-25
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 2
Query:    2 VVLNDRLGM*VRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 208
            VV NDRLG  VRVKCN DDTIGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEIHDGM LELYY
Sbjct:    4 VVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CX300506 vs. ExPASy Swiss-Prot
Match: UBL5_DANRE (Ubiquitin-like protein 5 OS=Danio rerio GN=ubl5 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.113e-25
Identity = 51/69 (73.91%), Postives = 61/69 (88.41%), Query Frame = 2
Query:    2 VVLNDRLGM*VRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 208
            VV NDRLG  VRVKCN++DTIGDLKKL+AAQTGTR +KI ++KWY I+K+H++L DYEIHDGM LELYY
Sbjct:    4 VVCNDRLGKKVRVKCNQEDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKNHVSLGDYEIHDGMNLELYY 72          
BLAST of CX300506 vs. ExPASy Swiss-Prot
Match: UBL5_CAEEL (Ubiquitin-like protein 5 OS=Caenorhabditis elegans GN=ubl-5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.611e-24
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 2
Query:    2 VVLNDRLGM*VRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 208
            + +NDRLG  VR+KCN  DTIGDLKKL+AAQTGTR +KI ++KWY IYKDHITL DYEIH+G   ELYY
Sbjct:    4 ITVNDRLGKKVRIKCNPSDTIGDLKKLIAAQTGTRWEKIVLKKWYTIYKDHITLMDYEIHEGFNFELYY 72          
BLAST of CX300506 vs. ExPASy Swiss-Prot
Match: UBL5_DROME (Ubiquitin-like protein 5 OS=Drosophila melanogaster GN=ubl PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.027e-23
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 2
Query:    2 VVLNDRLGM*VRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 208
            +  NDRLG  VRVKCN DDTIGDLKKL+AAQTGT+ +KI ++KWY I+KD I L DYEIHDGM LELYY
Sbjct:    4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTKHEKIVLKKWYTIFKDPIRLSDYEIHDGMNLELYY 72          
BLAST of CX300506 vs. ExPASy Swiss-Prot
Match: HUB1_SCHPO (Ubiquitin-like modifier hub1 OS=Schizosaccharomyces pombe GN=hub1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.636e-22
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 2
Query:    2 VVLNDRLGM*VRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYS 211
            V+ NDRLG  VRVKC  DDT+GD KKLVAAQTGT   +I ++KW++++KD+ITL DYEIHDGM LE+YYS
Sbjct:    4 VLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDGMSLEMYYS 73          
The following BLAST results are available for this feature:
BLAST of CX300506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBL5_ARATH2.065e-3292.86Ubiquitin-like protein 5 OS=Arabidopsis thaliana G... [more]
UBL5_PSAOB1.872e-2576.81Ubiquitin-like protein 5 OS=Psammomys obesus GN=UB... [more]
UBL5_MOUSE1.872e-2576.81Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 P... [more]
UBL5_MESAU1.872e-2576.81Ubiquitin-like protein 5 OS=Mesocricetus auratus G... [more]
UBL5_HUMAN1.872e-2576.81Ubiquitin-like protein 5 OS=Homo sapiens GN=UBL5 P... [more]
UBL5_BOVIN1.872e-2576.81Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=... [more]
UBL5_DANRE7.113e-2573.91Ubiquitin-like protein 5 OS=Danio rerio GN=ubl5 PE... [more]
UBL5_CAEEL4.611e-2471.01Ubiquitin-like protein 5 OS=Caenorhabditis elegans... [more]
UBL5_DROME1.027e-2372.46Ubiquitin-like protein 5 OS=Drosophila melanogaste... [more]
HUB1_SCHPO5.636e-2267.14Ubiquitin-like modifier hub1 OS=Schizosaccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionC07011A05SK SaltLeaf1 Citrus clementina cDNA clone C07011A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300506 ID=CX300506; Name=CX300506; organism=Citrus clementina; type=EST; length=258bp
GGTGGTGCTGAACGACAGGCTCGGGATGTAGGTGCGCGTGAAGTGCAACG
AAGACGACACCATAGGCGACTTGAAGAAGCTGGTGGCGGCTCAGACCGGG
ACTCGAGCCGACAAGATTCGGATTCAGAAGTGGTACAACATCTACAAGGA
CCACATCACTCTCAAGGACTACGAGATTCACGACGGCATGGGCCTTGAAC
TCTACTACAGCTAAATCCACCGTTAAAAAAATATGCCTGCTGCAAGCAGT
CAATACTA
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