CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12684 contig Ccv1_Contig12684:148..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_CHLMU (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia muridarum GN=kdsB PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.723e-34
Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 1
Query:  124 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIY 585
            S+ VGI+PAR+ SSRF GKPL  ILGK +IQR++E +  + +LD +VVATDD++I +   +FG   +MT ESC NGTER  EA+ +   + +IVVNIQGDEP + P IIDG+V+ L+  P    +T VT     DA   N +VKCV D  G A+Y
Sbjct:    7 SKRVGILPARWGSSRFPGKPLAKILGKTLIQRSYENALTSRSLDCVVVATDDQRIFDHVVEFGGLCVMTCESCANGTERVEEAVSQHFPQAEIVVNIQGDEPCLSPSIIDGLVEMLEGNPAIDIATPVTETVDPDAILTNHKVKCVFDKTGRALY 161          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_CHLTR (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis GN=kdsB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.012e-34
Identity = 74/155 (47.74%), Postives = 105/155 (67.74%), Query Frame = 1
Query:  124 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIY 585
            S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P A   T+VT +  PE     ++VKCV D +G A+Y
Sbjct:    7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNPAADMVTSVTETTDPEAILTDHKVKCVFDKNGKALY 161          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_CHLTA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=kdsB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.012e-34
Identity = 74/155 (47.74%), Postives = 105/155 (67.74%), Query Frame = 1
Query:  124 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIY 585
            S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P A   T+VT +  PE     ++VKCV D +G A+Y
Sbjct:    7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNPAADMVTSVTETTDPEAILTDHKVKCVFDKNGKALY 161          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_CHLFF (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=kdsB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.012e-34
Identity = 71/157 (45.22%), Postives = 104/157 (66.24%), Query Frame = 1
Query:  118 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD-AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            F S+ VG++PAR+ S RF GKPL NILGK +IQRT+E    +TTLD +VVATD+++I +    FG D +MTS  C NGTER  EA+ +   + +I+VNIQGDEP ++  ++D +V+ L+ +P+  V + A  +    +     +VKCV D +G A+Y
Sbjct:    6 FASKKVGVLPARWGSVRFTGKPLANILGKSLIQRTYENISQSTTLDKVVVATDNQRIMDHVLDFGGDCVMTSPECANGTERTAEAISRYFPEAEIIVNIQGDEPCLQHTVVDTLVRKLEESPEIQVVTPAAKTTDSHEILTNQKVKCVFDKNGKALY 162          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_CHLTB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=kdsB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.549e-34
Identity = 74/155 (47.74%), Postives = 104/155 (67.10%), Query Frame = 1
Query:  124 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIY 585
            S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P A   T VT +  PE     ++VKCV D +G A+Y
Sbjct:    7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNPAADMVTPVTETTDPEAILTDHKVKCVFDKNGKALY 161          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_CHLT2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=kdsB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.549e-34
Identity = 74/155 (47.74%), Postives = 104/155 (67.10%), Query Frame = 1
Query:  124 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIY 585
            S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P A   T VT +  PE     ++VKCV D +G A+Y
Sbjct:    7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNPAADMVTPVTETTDPEAILTDHKVKCVFDKNGKALY 161          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_CHLPN (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia pneumoniae GN=kdsB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.106e-32
Identity = 68/152 (44.74%), Postives = 100/152 (65.79%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIY 585
            +G++PAR+ SSR+ GKPL  I GK +IQRT+E +  ++ LD +VVATDD+ I +    FG   +MTS +C NGTER  E  +K   K +I+VNIQGDEP +  E++D +V+ L+++P+A   T V  +   E+     +VKCV D+ G A+Y
Sbjct:   11 IGVLPARWNSSRYPGKPLAKIHGKSLIQRTYENASQSSLLDKIVVATDDQHIIDHVTDFGGYAVMTSPTCSNGTERTGEVARKYFPKAEIIVNIQGDEPCLNSEVVDALVQKLRSSPEAELVTPVALTTDREEILTEKKVKCVFDSEGRALY 162          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PORG3 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=kdsB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.691e-32
Identity = 74/158 (46.84%), Postives = 101/158 (63.92%), Query Frame = 1
Query:  124 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFD----PNRVKCVVDNHGYAIY 585
            + V+ IIPARFASSRF GKPL ++LGK MIQR  ER  +A  +   VVATDDE+I +  + FG +V+MTS  C +GTERC EA  K+ +   IV+N+QGDEP I+ E ID ++ A    P+   +T       + +F+    PN  K V+D+ GYA+Y
Sbjct:    3 TEVIAIIPARFASSRFPGKPLADMLGKSMIQRVHER--IAGVVPRAVVATDDERIRQAVEDFGGEVVMTSPECSSGTERCREAFDKVGRGEKIVLNLQGDEPFIQKEQIDLLISAFD-KPETDIATLAEVFSSDASFERLNNPNSPKIVLDHGGYALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PORGI (3-deoxy-manno-octulosonate cytidylyltransferase OS=Porphyromonas gingivalis GN=kdsB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.783e-31
Identity = 73/158 (46.20%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  124 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFD----PNRVKCVVDNHGYAIY 585
            + V+ IIPARFASSRF GKPL ++LGK MIQR  ER  +   +   VVATDDE+I +  + FG +V+MTS  C +GTERC EA  K+ +   IV+N+QGDEP I+ E ID ++ A    P+   +T       + +F+    PN  K V+D+ GYA+Y
Sbjct:    3 TEVIAIIPARFASSRFPGKPLADMLGKSMIQRVHER--IVGVVPRAVVATDDERIRQAVEDFGGEVVMTSPECSSGTERCREAFDKVGRGEKIVLNLQGDEPFIQKEQIDLLISAFD-KPETDIATLAEVFSSDVSFERLNNPNSPKIVLDHGGYALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_CHLCV (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila caviae GN=kdsB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.328e-31
Identity = 65/157 (41.40%), Postives = 100/157 (63.69%), Query Frame = 1
Query:  118 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIY 585
            F S+ VG++PAR+ S+RF GKPL +ILGK +I+RT+E    +  LD ++VATDD++I +    FG D ++TS  C NGTER  E + +   + +I+VNIQGDEP ++  ++D +V+ L+  P+    T V  +    +     +VKCV D +G A+Y
Sbjct:    6 FASKKVGVLPARWGSARFTGKPLASILGKSLIRRTYENINQSIALDKVIVATDDQRIMDHVLDFGGDCVLTSPECANGTERTAETISRYFPEAEIIVNIQGDEPCLQHTVVDALVRKLEEFPEIQIVTPVAKTTDSHEILTNQKVKCVFDKNGKALY 162          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_CHLMU1.723e-3450.323-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLTR5.012e-3447.743-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLTA5.012e-3447.743-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLFF5.012e-3445.223-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLTB8.549e-3447.743-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLT28.549e-3447.743-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLPN2.106e-3244.743-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PORG34.691e-3246.843-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PORGI1.783e-3146.203-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLCV2.328e-3141.403-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
back to top