CX300516

Overview
NameCX300516
Unique NameCX300516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9703 contig Ccv1_Contig9703:34..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300516 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.818e-22
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 1
Query:   70 DTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 261
            DTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    3 DTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CX300516 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.151e-19
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   73 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 264
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CX300516 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.033e-17
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   70 DTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 258
            D CGNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    3 DKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CX300516 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.649e-15
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   76 CGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 261
            C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    5 CDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CX300516 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.153e-15
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   76 CGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 258
            C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    5 CSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CX300516 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.069e-14
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   70 DTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 261
            D CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    3 DKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX300516 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.069e-14
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   70 DTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 261
            D CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    3 DKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX300516 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.706e-12
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 1
Query:   70 DTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 261
            D CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    3 DKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CX300516 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1
Query:   70 DTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 261
            D CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    3 DKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CX300516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA1.818e-2268.75Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC7.151e-1960.94Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE1.033e-1766.67Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MALDO1.649e-1559.68Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3_PRUAV2.153e-1559.02Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ1.069e-1453.13Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.069e-1453.13Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ1.706e-1248.44Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI6.483e-1246.88Metallothionein-like protein 3B OS=Oryza sativa su... [more]
back to top
Properties
Property NameValue
Genbank descriptionC07011B05SK SaltLeaf1 Citrus clementina cDNA clone C07011B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300516 ID=CX300516; Name=CX300516; organism=Citrus clementina; type=EST; length=561bp
GTTTCGTACAATAAAGAGCCCTCTATTTCCAGTTTTAATTTCTAATTTCT
AAGCTCAATCAACATGTCGGACACCTGCGGCAACTGCGACTGCGCTGACA
GGAGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGCTGACTTCGTCGAG
ACTGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGGACGTTCAGGCTGC
TGAGGCTGAAGGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTGAACT
GCACTTGTGGTAGTCACTAATAAGCAAACACATGCAGCAAAAAATAAGAA
GCTGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAATAATGTAAGGGTGA
TTAAAAAAAAAAAGAAAAATTCTCTACTTCGTTTTTATGATGGTCTACTA
CTAGTGTGTGGAGTGATGTGCGTGTTGTGTCACCCATCACTCGTAATGTT
TTGTGTTTCCTTCTTCATAATCATGTAATATATGGCCATGGCCATGACCG
TGGCCTTGTGTGGTTTAATTTTAATGTATTATTGTTAGTCTAAAAAAAAA
AAAAAAAAAAA
back to top