CX300524

Overview
NameCX300524
Unique NameCX300524
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1871 contig Ccv1_Contig1871:256..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300524 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.293e-19
Identity = 46/62 (74.19%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 ITEALMALQDMSGSCPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKTRASYKLS 186
            I EAL+AL +  GS PYA+AKYME+KHKDELPANFRKIL +QLK+ AAKG LIK +ASYKLS
Sbjct:   56 IKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLS 117
[Close]
BLAST of CX300524 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.286e-12
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 ITEALMALQDMSGSCPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKTRASYKLS 186
            ++EA+ +L++ +GS  YAIAK++E+KHK +LP NFRK+L VQLK   A G L K + SYKLS
Sbjct:   57 VSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLS 118
[Close]
BLAST of CX300524 vs. ExPASy Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 ITEALMALQDMSGSCPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKTRASYKLS 186
            ++EA+ AL++ SGS   AI K++E+KHK  LPANFRKIL  Q+K   A G L K + SYKL+
Sbjct:   62 VSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKLA 123
The following BLAST results are available for this feature:
BLAST of CX300524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
H1_SOLPN3.293e-1974.19Histone H1 OS=Solanum pennellii PE=2 SV=1[more]
H1_MAIZE2.286e-1254.84Histone H1 OS=Zea mays PE=2 SV=2[more]
H1_WHEAT8.686e-1253.23Histone H1 OS=Triticum aestivum PE=2 SV=2[more]
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Properties
Property NameValue
Genbank descriptionC07011C03SK SaltLeaf1 Citrus clementina cDNA clone C07011C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300524 ID=CX300524; Name=CX300524; organism=Citrus clementina; type=EST; length=567bp
ATAACGGAGGCACTGATGGCGCTGCAAGATATGAGCGGTTCATGCCCATA
CGCAATAGCCAAGTACATGGAAGAGAAGCACAAGGATGAGCTCCCAGCGA
ATTTCAGGAAAATATTGGCAGTGCAGCTGAAGCACTTCGCTGCGAAAGGA
AATCTCATCAAGACCAGGGCCTCTTACAAGCTCTCTGAAGCGGCAGCTGG
CAAAACCAAAAAAGAGATCAAGACCAAGGCCAAGGCCCCAAGGAAAACAA
GGTCCGTAACTGCTGCAGCTAAAATCAAAGCAGAGTCTGCCGCCGCCGCT
CCTCCTCCGCCTAAGAAGGCAAAGAAATCGGCTGCTGCCAAACCAAAGCA
GCCCAAATCCATCAAGTCCTCTGCTGCTAAGAAAGCCAAGAAAGCTACTG
CTCAGTAGTAATATGTATGATATAATACTAGTAAAGTACAAACTAGTTTC
AACTTCCTTGTCTGATAAGAAGTATCATGTACATGTCAACTCCCGGTATG
ATCGTGTTTTGCATAAATGAATGTAATGATCTCCCGACTTTTGGTTTGGT
TTAAAAAAAAAAAAAAA
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