CX300527

Overview
NameCX300527
Unique NameCX300527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length483
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9703 contig Ccv1_Contig9703:80..565. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300527 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.514e-20
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 3
Query:   18 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVN 203
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C N
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTN 60          
BLAST of CX300527 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.954e-16
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 3
Query:   27 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVN 203
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTD 60          
BLAST of CX300527 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.954e-16
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   18 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVN 203
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V AAE+ G CKCG +C CVN
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVN 59          
BLAST of CX300527 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.502e-15
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 3
Query:   18 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVN 203
            MS  C NCDC+D SQC KKG S+    VET+   + T V+MD  AAE  GNCKCGP+CACV+
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDT-VIMDAPAAENGGNCKCGPSCACVD 61          
BLAST of CX300527 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.057e-13
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 3
Query:   18 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVN 203
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTD 57          
BLAST of CX300527 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.057e-13
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 3
Query:   18 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVN 203
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTD 57          
BLAST of CX300527 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.992e-13
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 3
Query:   18 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVN 203
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVS 61          
BLAST of CX300527 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.737e-11
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 3
Query:   18 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCAC 197
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSC 58          
The following BLAST results are available for this feature:
BLAST of CX300527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MT3_CARPA1.514e-2067.74Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC2.954e-1661.02Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE2.954e-1666.13Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV9.502e-1558.06Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ3.057e-1353.23Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI3.057e-1353.23Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3_MALDO3.992e-1356.45Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3B_ORYSJ3.737e-1150.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionC07011C06SK SaltLeaf1 Citrus clementina cDNA clone C07011C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300527 ID=CX300527; Name=CX300527; organism=Citrus clementina; type=EST; length=483bp
GTTCTAAGCTCATCAACATGTCGGACACCTGCGGCAACTGCGACTGCGCT
GACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTACGCTGCTGACTTCGT
CGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGGACGTTCAGG
CTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTG
AACCTGCACTTGTGGTAGTCACTAATAAGCAAACACATGCAGCAAAAAAT
AAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAAAATGTAAGG
GTGATTAAAAAAAAGAAAAATTCTCTACTTCGTTTTTATGATGGTCTACT
ACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCACCCATCACTCGTAATGT
TTTGTGTTTCCTTCTTCATAATCATGTAATATATGGCCATGGCCATGACC
GTGGCCTTGTGTGGTTTAATTTTAATGTATTAT
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