CX300528

Overview
NameCX300528
Unique NameCX300528
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length319
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig648 contig Ccv1_Contig648:256..574. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300528 vs. ExPASy Swiss-Prot
Match: PSAK_MEDSA (Photosystem I reaction center subunit psaK, chloroplastic OS=Medicago sativa GN=PSAK PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.430e-15
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 3 
Query:    3 GLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 119
            GLAPSANRKATAGLKLE RDSGLQTGDPAGFTLADTLAC
Sbjct:   71 GLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLAC 109
[Close]
BLAST of CX300528 vs. ExPASy Swiss-Prot
Match: PSAK_ARATH (Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.878e-14
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 3 
Query:    3 GLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 119
            GLAPSANRKATAGL+LE RDSGLQTGDPAGFTLADTLAC
Sbjct:   71 GLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLAC 109
[Close]
BLAST of CX300528 vs. ExPASy Swiss-Prot
Match: PSAK_HORVU (Photosystem I reaction center subunit psaK, chloroplastic OS=Hordeum vulgare GN=PSAK PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.453e-14
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 3 
Query:    3 GLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 119
            GLAPSANRKATAGLKLE R+SGLQTGDPAGFTLADTLAC
Sbjct:   67 GLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLAC 105
The following BLAST results are available for this feature:
BLAST of CX300528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSAK_MEDSA8.430e-1597.44Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_ARATH1.878e-1494.87Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_HORVU2.453e-1494.87Photosystem I reaction center subunit psaK, chloro... [more]
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Properties
Property NameValue
Genbank descriptionC07011C07SK SaltLeaf1 Citrus clementina cDNA clone C07011C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300528 ID=CX300528; Name=CX300528; organism=Citrus clementina; type=EST; length=319bp
TTGGGCTGGCTCCATCAGCAAACAGGAAAGCAACGGCAGGATTGAAGCTT
GAAGTGAGGGACTCTGGCTTGCAAACTGGTGACCCAGCTGGGTTCACTTT
GGCTGACACATTGGCTTGTGGCAGTGTTGGTCACATCATTGGTGTTGGGG
TGGTCCTTGGCCTTAAGAACTTGGGTGCTCTGTAAAAAATTTCGAAGCAG
TATGTTATGTTAAATCGATTGTTAATACTCGCTGTGCCATTTCTGTTGCA
CCTATCTGCCTGGTTTTAATTTTTGATGGCTTCATTTGGATATTAAAAAA
AAAAAAAAAAAAAAAAAAA
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