CX300529

Overview
NameCX300529
Unique NameCX300529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15 contig Ccv1_Contig15:166..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300529 vs. ExPASy Swiss-Prot
Match: BCHH_RHOS4 (Magnesium-chelatase subunit H OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchH PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.239e-39
Identity = 82/207 (39.61%), Postives = 123/207 (59.42%), Query Frame = 1
Query:    4 YLSRKSFAFDCDAPGAGMSEK*KVFEMALGTADATFQNLDSSEISLTDVSHYFDSDPTNLVQSFRKDGKKPNAYIADTTTANAQVRTLAETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIEGI 624
            Y +RKSFA+          +   + + +L T D  +QNL+S E+ +T V HYFD+         R  G++ + YI D T     VRTL + + L+ R + LNPK+YEG++  G EGVR+IE ++TNT+GWSAT+ QV+ WVY+  + TF+ DE M  RL   NP +  ++ +  LEA+ R YW+   E +  L+    E+ED++EGI
Sbjct:  987 YEARKSFAYGRSGKPV---QNAALLQKSLKTVDVAYQNLESVELGVTTVDHYFDTLGGIARAVKRARGEEASVYIGDQTRGGGTVRTLKDQIALETRARSLNPKYYEGLLKHGAEGVRQIEAQVTNTLGWSATTQQVEPWVYQRLSETFVLDEAMRRRLAELNPEASVRMAERLLEASARNYWQPDAETLAALQGAADELEDRLEGI 1190          
BLAST of CX300529 vs. ExPASy Swiss-Prot
Match: BCHH_RHOCA (Magnesium-chelatase subunit H OS=Rhodobacter capsulatus GN=bchH PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.149e-39
Identity = 82/208 (39.42%), Postives = 126/208 (60.58%), Query Frame = 1
Query:    4 YLSRKSFAFDCDAPGAGMSEK*KVFEMALGTADATFQNLDSSEISLTDVSHYFDSDPTNLVQSFR-KDGKKPNAYIADTTTANAQVRTLAETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIEGI 624
            Y +RKSFA+  D      +++  + +  L   D  +QNL+S E+ +T V HYFD+       + R + GK+   YI D T     VRTL + + L+ R + LNPK+YEG++  G EGVR+IE ++TNT+GWSAT+GQV+ WVY+  + TF+ D+EM  RL + N  +  ++ Q  LEA+ R YW+     +  L+    E+ED++EG+
Sbjct:  987 YEARKSFAYGRDGKS---TKQVNLLQNVLSKVDLAYQNLESVELGVTTVDHYFDTLGGIARATKRAQGGKETPVYIGDQTRGAGTVRTLQDQIALETRARSLNPKFYEGLLKHGAEGVRQIEAQVTNTLGWSATTGQVEPWVYQRLSETFVLDDEMRERLASLNSAASSRMAQRLLEASDRNYWQPDPATLAALQAAADELEDRMEGV 1191          
BLAST of CX300529 vs. ExPASy Swiss-Prot
Match: BCHH_CHLP8 (Magnesium-chelatase subunit H OS=Chlorobaculum parvum (strain NCIB 8327) GN=bchH PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.851e-35
Identity = 70/210 (33.33%), Postives = 127/210 (60.48%), Query Frame = 1
Query:    1 MYLSRKSFAFDCDAPGAGMSEK*KVFEMALGTADATFQNLDSSEISLTDVSHYFDSDPTNLVQSFRKDGKKPNAYI--ADTTTANAQVRTLAETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIEGI 624
            +++ R S A+     G   SE   + +  LG+ D     +DS+E  ++D+ HYF S  +  + + R++ K  +  +   ++ T++ ++    +++R++ R+KLLNPKW+EGM+  G+ G  EI  R+T  +GW A +  VD+WVY++   T+  D EM  RL   NP + + +V   LEA+GRG W+  +  IE+L+++Y+++ED++EG+
Sbjct: 1062 LFIRRNSSAYGGGRKGEKQSE---ILQKLLGSVDRVVHQVDSTEFGISDIDHYFSSSGSLQLAARRRNTKTSDIKLNYVESFTSDIKLDEADKSLRVEYRSKLLNPKWFEGMLKHGHSGAGEISNRVTYMLGWDAVTKSVDDWVYKKTAETYALDPEMRERLATLNPQAIKNIVGRMLEAHGRGMWKADQSMIEELQEIYADLEDRLEGM 1268          
BLAST of CX300529 vs. ExPASy Swiss-Prot
Match: Y1441_METJA (Uncharacterized protein MJ1441 OS=Methanocaldococcus jannaschii GN=MJ1441 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.899e-30
Identity = 76/203 (37.44%), Postives = 111/203 (54.68%), Query Frame = 1
Query:   19 SFAFDCDAPGAGMSEK*KVFEMALGTADATFQNLDSSEISLTDVSHYFDSDP--TNLVQSFRKDGKKPNAYIADTTTAN-AQVRTLAETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIE 618
            S+A+  D  G    +    FE  L T D TF  + + E  L     YF +    TN  +  +  G++  AY  DT   N  +VRTL E +   + TKLLNPKW EGM   GY+G  +I KR+    GWSAT+ +V+NW+++E   TF+++EE        N  +  ++ +  LEA  RG W+T+E NIE+L++ Y E+E  IE
Sbjct:  997 SYAYGKDVYG---KKAINAFENILKTVDLTFNKVVTDEYDLFGCCCYFGTHGGLTNAARVLK--GEEVKAYYGDTRNPNNVEVRTLKEEIERVSLTKLLNPKWIEGMKRHGYKGAGDIAKRIGRVYGWSATTKEVENWIFDEIFNTFVKNEENRKFFKEHNIYALEEIARRLLEAYQRGLWKTTEGNIEELKRAYLEIEGDIE 1194          
BLAST of CX300529 vs. ExPASy Swiss-Prot
Match: Y908_METJA (Uncharacterized protein MJ0908 OS=Methanocaldococcus jannaschii GN=MJ0908 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.470e-24
Identity = 66/180 (36.67%), Postives = 97/180 (53.89%), Query Frame = 1
Query:   88 LGTADATFQNLDSSEISLTDVSHYFDSDPTNLVQSFRK-DGKKPNAYIADTTTANAQVRT--LAETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIE 618
            L   + T +N DS E  + +    F+S    L+ S     GKKP +Y+ DT+  N  +RT  L E  +   RTK++NPKW EGM   GY+G  +  K + +   W ATSG +D+W+YE+    ++ D++M       NP +   + +  LEA  RG W+  EE  EKLR+ Y E+E  IE
Sbjct: 1052 LSKIELTVKNEDSQEWDIFEGDD-FNSYHGGLIASVTYYSGKKPVSYVGDTSNPN-DIRTKHLKEEGKEIFRTKIMNPKWIEGMKRHGYKGAADFSKYVDHMFAWDATSGIIDDWMYEKIAEKYVFDKDMEEFFKENNPYALLNITERLLEAIERGMWKADEEMKEKLRKKYLEIEGMIE 1229          
BLAST of CX300529 vs. ExPASy Swiss-Prot
Match: COBN_PSEDE (Aerobic cobaltochelatase subunit cobN OS=Pseudomonas denitrificans GN=cobN PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17
Identity = 55/184 (29.89%), Postives = 90/184 (48.91%), Query Frame = 1
Query:    4 YLSRKSFAFDCDAPGAGMSEK*KVFEMALGTADATFQNLDSSEISLTDVSHYFDSDPTNLVQSFRKDGKKPNAYIADTTTANAQV-RTLAETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYW 552
            YL+  ++A+     G    +   +FE  L T +A  QN D+ E  L D   Y+  +      + +  G +P  Y  D +     V R+L E +    R +++NPKW +G+M  GY+G  EI   +     ++AT+G V +  +E A   FI DE + + + + NP +F +L +  LEA  R  W
Sbjct: 1069 YLTWGAYAYGAGEEGKAERD---LFEERLRTIEAVVQNQDNREHDLLDSDDYYQFEGGMSAAAEQLGGHRPAIYHNDHSRPEKPVIRSLEEEIGRVVRARVVNPKWIDGVMRHGYKGAFEIAATVDYMFAFAATTGAVRDHHFEAAYQAFIVDERVADFMRDKNPAAFAELAERLLEAIDRNLW 1249          
BLAST of CX300529 vs. ExPASy Swiss-Prot
Match: COBN_PSEAE (Aerobic cobaltochelatase subunit cobN OS=Pseudomonas aeruginosa GN=cobN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14
Identity = 54/205 (26.34%), Postives = 86/205 (41.95%), Query Frame = 1
Query:    1 MYLSRKSFAFDCDAPGAGMSEK*KVFEMALGTADATFQNLDSSEISLTDVSHYFDSDPTNLVQSFRKDGKKPNAYIADTTTA-NAQVRTLAETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDK 612
            +YL+   +A+     G    E+   F   L    A   N D+ E  L D + Y+      L       G    +Y  D +   N ++RTL E +    R + +NPKW  GM   GY+G  E+   +     + ATS  +D+  Y      ++ D E    +   NP + R + +  +EA  RG W+      E L  L  +VE++
Sbjct: 1047 VYLNWGGYAYGAADDGTPARER---FAQRLERLQAVLHNQDNREHDLLDSNDYYQFQGGMLAAVETLRGAPVASYHGDHSQPDNPRIRTLKEELNRVVRARAVNPKWIAGMKRHGYKGAFELAATVDYLCAFDATSELIDDHQYALLADAYLLDAETREFVRQHNPQALRDMAERLVEAQRRGLWQEPGAYREALENLLLDVEEE 1248          
The following BLAST results are available for this feature:
BLAST of CX300529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
BCHH_RHOS41.239e-3939.61Magnesium-chelatase subunit H OS=Rhodobacter sphae... [more]
BCHH_RHOCA6.149e-3939.42Magnesium-chelatase subunit H OS=Rhodobacter capsu... [more]
BCHH_CHLP81.851e-3533.33Magnesium-chelatase subunit H OS=Chlorobaculum par... [more]
Y1441_METJA8.899e-3037.44Uncharacterized protein MJ1441 OS=Methanocaldococc... [more]
Y908_METJA1.470e-2436.67Uncharacterized protein MJ0908 OS=Methanocaldococc... [more]
COBN_PSEDE8.640e-1729.89Aerobic cobaltochelatase subunit cobN OS=Pseudomon... [more]
COBN_PSEAE5.242e-1426.34Aerobic cobaltochelatase subunit cobN OS=Pseudomon... [more]
back to top
Properties
Property NameValue
Genbank descriptionC07011C08SK SaltLeaf1 Citrus clementina cDNA clone C07011C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300529 ID=CX300529; Name=CX300529; organism=Citrus clementina; type=EST; length=739bp
ATGTATTTGAGCAGGAAGTCCTTTGCCTTTGATTGTGATGCCCCTGGCGC
AGGCATGAGTGAGAAATGAAAAGTTTTTGAGATGGCTCTAGGCACAGCAG
ACGCCACATTCCAAAACCTCGACTCCTCTGAAATCTCCCTCACTGATGTG
AGCCACTACTTCGATTCCGACCCAACAAATTTGGTCCAGAGCTTCAGGAA
GGATGGAAAGAAGCCTAATGCCTACATTGCTGATACTACCACAGCTAATG
CTCAGGTGCGTACACTTGCTGAGACCGTGAGGCTTGATGCGCGAACCAAA
TTGTTGAACCCGAAATGGTATGAAGGAATGATGTCCAGTGGTTATGAGGG
TGTTCGTGAAATTGAGAAGCGGCTTACTAACACTGTTGGGTGGAGTGCAA
CTTCGGGCCAAGTTGACAACTGGGTCTACGAAGAAGCTAACACTACCTTT
ATCCAAGATGAGGAAATGTTGAACAGGCTGATGAATACCAATCCAAATTC
ATTTAGGAAGTTGGTGCAGACATTCCTGGAGGCCAATGGCCGTGGATACT
GGGAAACTTCGGAGGAAAACATTGAGAAGTTGAGGCAGTTGTATTCGGAA
GTTGAAGACAAGATTGAAGGGATTGACCGGTGAATTATAGTAGTAAACTG
TTAAAATAGGTCCTAGTCTGCAATATCAATTGACAGTGCTGATTTACATA
GCCTTTCTTTTCCACATTCACTGTGAATTATTGGATGCA
back to top