CX300530

Overview
NameCX300530
Unique NameCX300530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300530_ssr82 microsatellite CX300530_ssr82:82..99. BLAST: Citrus ESTs to Prunus persica proteins V1
CX300530_ssr98 microsatellite CX300530_ssr98:98..113. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300530 vs. ExPASy Swiss-Prot
Match: PGR5_ARATH (Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana GN=PGR5 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.628e-40
Identity = 89/135 (65.93%), Postives = 107/135 (79.26%), Query Frame = 2 
Query:  131 MAATSVCVAG-----LSSSFHGSWGASFANGGEEYR-MLARSVPNVRVAR----PIRMQPMMGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 505
            MAA S+   G     + +SF+G WG+S +  GE+Y+ ML+++V   + AR     IR  PMM N+NEGKG+FAP+VV+TRN++GKKRFNQ RGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA
Sbjct:    1 MAAASISAIGCNQTLIGTSFYGGWGSSIS--GEDYQTMLSKTVAPPQQARVSRKAIRAVPMMKNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 133
The following BLAST results are available for this feature:
BLAST of CX300530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGR5_ARATH3.628e-4065.93Protein PROTON GRADIENT REGULATION 5, chloroplasti... [more]
back to top
Properties
Property NameValue
Genbank descriptionC07011C10SK SaltLeaf1 Citrus clementina cDNA clone C07011C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300530 ID=CX300530; Name=CX300530; organism=Citrus clementina; type=EST; length=676bp
AAACACATGCAGCACAACCCCAGAAACCACAAACAAGCTAGCAAACCCTC
TGAGCCTCCTTCACTGAAAGCACAAGCTATTTGTGTGTGTGTGTGTGTGC
GTGCGTGCGTGCGTGTTGAGCGTTTCAATTATGGCTGCTACATCAGTGTG
TGTAGCTGGGTTATCATCTTCGTTTCATGGAAGCTGGGGAGCTTCGTTTG
CTAATGGTGGTGAAGAATACAGGATGTTGGCAAGATCAGTGCCGAATGTT
AGAGTGGCAAGACCCATTAGAATGCAACCGATGATGGGGAACATTAATGA
AGGCAAAGGCATTTTTGCTCCTGTTGTTGTTCTCACTCGTAATATCATTG
GCAAGAAGAGGTTCAATCAGTTTAGAGGCAAAGCTATTGCCTTGCATTCT
CAGGTAATTACTGAATTCTGCAAATCAATAGGAGCTGATGCAAAGCAAAG
GCAAGGCCTCATCCGTTTGGCTAAGAAGAATGGAGAAAGACTTGGCTTCC
TTGCATGATAAGAAAAACATTTATTGTTTTGTATTGTTATAACCATGAGA
TGTTTTAAGTTTATAGTTTTTTCAAGTGCTTTCTAATGTAAACATACTTT
TCTTCAGCTGGGTGTGTCCCAGAAATAGAATGTAACCTAAGATTAATCCA
TCCTCTTCTACACTTATCATTCTTCA
back to top