CX300533

Overview
NameCX300533
Unique NameCX300533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4528 contig Ccv1_Contig4528:371..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300533 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.684e-43
Identity = 92/161 (57.14%), Postives = 114/161 (70.81%), Query Frame = 3
Query:    3 NFTDHEEKMIIHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQTGSDGGQNNQDGFSST-SQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDS 482
            +FT+HEEKMIIHLQ+LLGNRWAAIASYLP RTDNDIKNYWNTH        Q+  +G    QDG SS  S ++ +KGQWERRLQTDIHMAKQALC+ALSLDKTS ++    L +   +  +P  ++TY      S+AENI+RLL+NW K  P  + +T  +
Sbjct:   69 DFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQSPENG--KCQDGNSSVDSDKSVSKGQWERRLQTDIHMAKQALCDALSLDKTSSSTDDPKLSTVQTTQPRPFQASTY------SSAENIARLLENWKKKSPVNASSTSQA 221          
BLAST of CX300533 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12
Identity = 49/134 (36.57%), Postives = 68/134 (50.75%), Query Frame = 3
Query:    3 NFTDHEEKMIIHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQTGSDGGQNNQDGFSSTSQQA--------SNKGQWERRLQTDIHMAK-----QALCEALSLD-KTSPTSPANLLLSPDQSNLK 362
            NFT+ E+++II L SLLGN+W+ IA  LP RTDN+IKNYWNTH               ++  DG +S  Q          S +   + ++  DI + +     Q  C  L+LD K SP  P    ++  Q NLK
Sbjct:   69 NFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRSINDGTASQDQVTTISFSNANSKEEDTKHKVAVDIMIKEENSPVQERCPDLNLDLKISP--PCQQQINYHQENLK 200          
BLAST of CX300533 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 3
Query:    3 NFTDHEEKMIIHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTH 131
            NFTD E+++II L SLLGN+W+ IA  LP RTDN+IKNYWNTH
Sbjct:   69 NFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111          
BLAST of CX300533 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 3
Query:    3 NFTDHEEKMIIHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTH 131
            NFT+ E+++II L SLLGN+W+ IA  LP RTDN+IKNYWNTH
Sbjct:   69 NFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111          
BLAST of CX300533 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 3
Query:    3 NFTDHEEKMIIHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTH 131
            NFT+ E+++II L SLLGN+W+ IA  LP RTDN+IKNYWNTH
Sbjct:   69 NFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111          
BLAST of CX300533 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3
Query:    3 NFTDHEEKMIIHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQTGSDGGQNNQDGFSSTSQQASNKGQWE 239
            NFT  E+ +II L SLLGN+W+ IA+ LP RTDN+IKNYWNTH        + G D   +     + TSQ +S+  + E
Sbjct:   69 NFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTH--VKRKLLRKGIDPATHRPINETKTSQDSSDSSKTE 145          
BLAST of CX300533 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 3
Query:    3 NFTDHEEKMIIHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTH 131
            NFT+ E+++II L SLLGN+W+ IA  LP RTDN+IKNYWNTH
Sbjct:   69 NFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTH 111          
BLAST of CX300533 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 3
Query:    3 NFTDHEEKMIIHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTH 131
            NFTD EE +II L  LLGNRW+ IA  +P RTDN +KNYWNTH
Sbjct:   69 NFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTH 111          
BLAST of CX300533 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 3
Query:    3 NFTDHEEKMIIHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQTGSDGGQNNQDGFSSTSQQAS 221
            NFTD EE+ II L  LLGN+W+ IA+ LP RTDN+IKN WNTH        +    G  +   G  +T+  +S
Sbjct:   71 NFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQREKKKAGAGSGDAGTPATAPLSS 143          
BLAST of CX300533 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.492e-11
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 3
Query:    3 NFTDHEEKMIIHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTH 131
            NFT+ EE +II L  LLGNRW+ IA  +P RTDN +KNYWNTH
Sbjct:   73 NFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTH 115          
The following BLAST results are available for this feature:
BLAST of CX300533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MYB06_ANTMA5.684e-4357.14Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MYB08_ANTMA1.045e-1236.57Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB6_ARATH1.156e-1169.77Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB4_ARATH1.972e-1167.44Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB3_ARATH1.972e-1167.44Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB32_ARATH1.972e-1145.57Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB30_ANTMA2.575e-1167.44Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB23_ARATH2.575e-1167.44Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
MYB1_MAIZE3.363e-1145.21Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
WER_ARATH7.492e-1165.12Transcription factor WER OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionC07011D01SK SaltLeaf1 Citrus clementina cDNA clone C07011D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300533 ID=CX300533; Name=CX300533; organism=Citrus clementina; type=EST; length=656bp
GTAACTTCACTGATCATGAAGAAAAAATGATCATCCACCTCCAATCTCTT
TTAGGCAACAGATGGGCAGCCATAGCTTCATATCTTCCACAGAGGACAGA
CAACGACATAAAAAATTATTGGAACACCCACTTGAAAAAGAAGCTGAAAA
AGCTCCAAACAGGGAGCGATGGAGGACAAAATAATCAAGATGGATTTTCA
TCTACTTCACAACAAGCTTCCAATAAGGGTCAGTGGGAGAGAAGGCTCCA
AACAGACATACACATGGCCAAACAAGCCCTTTGTGAAGCCTTGTCCCTTG
ACAAGACAAGCCCTACCTCCCCTGCTAATTTGTTATTATCACCTGATCAA
TCAAACTTGAAGCCAATGAGTAGTACTACTTACAACAACACACCATATGC
ATCAAATGCTGAAAACATATCTCGGTTGCTCCAAAACTGGATGAAAAACC
CACCAAAAATTTCTGAAACCACTCAGGATTCATTCACCAACACGGCATAT
GCGTCGGCGGCGGGGTCCGGGTCCAATATTTCAAGCGAAGGGGCGCTCAG
TGCAACCACACCAGAGGGTTTTGACTCGCTGTTTAGCTTCAACTCTTCCA
ACTCTGATGCCTCTCAGTCTGAGACGACGGCGAACTTGACCTCGGAGACT
AGCCTG
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