CX300535

Overview
NameCX300535
Unique NameCX300535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14522 contig Ccv1_Contig14522:34..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: UBL5_ARATH (Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.197e-34
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYS 240
            MIEVVLNDRLG KVRVKCN+DDTIGDLKKLVAAQTGTRA+KIRIQKWYNIYKDHITLKDYEIHDGMGLELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYN 73          
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: UBL5_PSAOB (Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.085e-27
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 237
            MIEVV NDRLG KVRVKCN DDTIGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEIHDGM LELYY
Sbjct:    1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: UBL5_MOUSE (Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.085e-27
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 237
            MIEVV NDRLG KVRVKCN DDTIGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEIHDGM LELYY
Sbjct:    1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: UBL5_MESAU (Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.085e-27
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 237
            MIEVV NDRLG KVRVKCN DDTIGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEIHDGM LELYY
Sbjct:    1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: UBL5_HUMAN (Ubiquitin-like protein 5 OS=Homo sapiens GN=UBL5 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.085e-27
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 237
            MIEVV NDRLG KVRVKCN DDTIGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEIHDGM LELYY
Sbjct:    1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: UBL5_BOVIN (Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.085e-27
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 237
            MIEVV NDRLG KVRVKCN DDTIGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEIHDGM LELYY
Sbjct:    1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: UBL5_DANRE (Ubiquitin-like protein 5 OS=Danio rerio GN=ubl5 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.125e-27
Identity = 55/72 (76.39%), Postives = 65/72 (90.28%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 237
            MIEVV NDRLG KVRVKCN++DTIGDLKKL+AAQTGTR +KI ++KWY I+K+H++L DYEIHDGM LELYY
Sbjct:    1 MIEVVCNDRLGKKVRVKCNQEDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKNHVSLGDYEIHDGMNLELYY 72          
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: UBL5_CAEEL (Ubiquitin-like protein 5 OS=Caenorhabditis elegans GN=ubl-5 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.673e-26
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 237
            MIE+ +NDRLG KVR+KCN  DTIGDLKKL+AAQTGTR +KI ++KWY IYKDHITL DYEIH+G   ELYY
Sbjct:    1 MIEITVNDRLGKKVRIKCNPSDTIGDLKKLIAAQTGTRWEKIVLKKWYTIYKDHITLMDYEIHEGFNFELYY 72          
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: UBL5_DROME (Ubiquitin-like protein 5 OS=Drosophila melanogaster GN=ubl PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.956e-26
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 237
            MIE+  NDRLG KVRVKCN DDTIGDLKKL+AAQTGT+ +KI ++KWY I+KD I L DYEIHDGM LELYY
Sbjct:    1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTKHEKIVLKKWYTIFKDPIRLSDYEIHDGMNLELYY 72          
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: HUB1_SCHPO (Ubiquitin-like modifier hub1 OS=Schizosaccharomyces pombe GN=hub1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.268e-24
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYS 240
            MIEV+ NDRLG KVRVKC  DDT+GD KKLVAAQTGT   +I ++KW++++KD+ITL DYEIHDGM LE+YYS
Sbjct:    1 MIEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDGMSLEMYYS 73          
The following BLAST results are available for this feature:
BLAST of CX300535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBL5_ARATH1.197e-3494.52Ubiquitin-like protein 5 OS=Arabidopsis thaliana G... [more]
UBL5_PSAOB1.085e-2779.17Ubiquitin-like protein 5 OS=Psammomys obesus GN=UB... [more]
UBL5_MOUSE1.085e-2779.17Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 P... [more]
UBL5_MESAU1.085e-2779.17Ubiquitin-like protein 5 OS=Mesocricetus auratus G... [more]
UBL5_HUMAN1.085e-2779.17Ubiquitin-like protein 5 OS=Homo sapiens GN=UBL5 P... [more]
UBL5_BOVIN1.085e-2779.17Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=... [more]
UBL5_DANRE4.125e-2776.39Ubiquitin-like protein 5 OS=Danio rerio GN=ubl5 PE... [more]
UBL5_CAEEL2.673e-2673.61Ubiquitin-like protein 5 OS=Caenorhabditis elegans... [more]
UBL5_DROME5.956e-2675.00Ubiquitin-like protein 5 OS=Drosophila melanogaste... [more]
HUB1_SCHPO3.268e-2469.86Ubiquitin-like modifier hub1 OS=Schizosaccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionC07011D03SK SaltLeaf1 Citrus clementina cDNA clone C07011D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300535 ID=CX300535; Name=CX300535; organism=Citrus clementina; type=EST; length=637bp
AAATCAAAACAGGAGACAAAGATGATTGAGGTGGTGCTGAACGACAGGCT
CGGGATGAAGGTGCGCGTGAAGTGCAACGAAGACGACACCATAGGCGACT
TGAAGAAGCTGGTGGCGGCTCAGACCGGGACTCGAGCCGACAAGATTCGG
ATTCAGAAGTGGTACAACATCTACAAGGACCACATCACTCTCAAGGACTA
CGAGATTCACGACGGCATGGGCCTTGAACTCTATTACAGCTAAATCCACC
GTTAAATATATATGCTGCTGCAAGCAGTCAATACTACTAGGAACCATATG
CTATAATAAGCAAGGGGTATTGGAAGACTGCGGCAGGGCCAACTTTACTA
ATACTGTCTTGTAAGAAAAAAATTTGTGAAGACTCGTAAAAACTTATTTG
TGGTTATGTAACATATCTGGGATCTGGACTTACTCTCCATTTTGAATGGT
GTTTAGATCTTTTATCAAGGTATTGAGGTACCACATGCTTGTCAGTCCAT
TAGGCTGATAGAATTTTGTGAATACCTTGGCTAAGTGTGTGCCATCTTTC
TTGCATAAAAATGGTAGATGATCCATTAGTGAGTTGCTGTGTATGTCATC
TTGTATATCAACTACAAAACTTGTGTGGTTGATTTCT
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