CX300537

Overview
NameCX300537
Unique NameCX300537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length360
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14114 contig Ccv1_Contig14114:1151..1510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300537 vs. ExPASy Swiss-Prot
Match: ALFC2_ARATH (Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.746e-19
Identity = 45/49 (91.84%), Postives = 46/49 (93.88%), Query Frame = 2
Query:    2 GGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVKGYTY 148
            GGRPENV AAQ TLL RAKANSLAQLGKYTGEGESEEAK+GMFVKGYTY
Sbjct:  350 GGRPENVNAAQTTLLARAKANSLAQLGKYTGEGESEEAKEGMFVKGYTY 398          
BLAST of CX300537 vs. ExPASy Swiss-Prot
Match: ALFC1_ARATH (Probable fructose-bisphosphate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=FBA1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.183e-18
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 2
Query:    2 GGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVKGYTY 148
            GG+ ENVKAAQD LL RAKANSLAQLGKYTGEGESEEAK+GMFVKGYTY
Sbjct:  351 GGKEENVKAAQDILLARAKANSLAQLGKYTGEGESEEAKEGMFVKGYTY 399          
BLAST of CX300537 vs. ExPASy Swiss-Prot
Match: ALFC_ORYSJ (Fructose-bisphosphate aldolase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0171300 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.766e-16
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 2
Query:    2 GGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVKGYTY 148
            GG+PENVKAAQD LL RAKANSLAQLGKYT +GE+ EAK+GMFVK Y Y
Sbjct:  340 GGQPENVKAAQDALLLRAKANSLAQLGKYTSDGEAAEAKEGMFVKNYVY 388          
BLAST of CX300537 vs. ExPASy Swiss-Prot
Match: ALFC1_PEA (Fructose-bisphosphate aldolase 1, chloroplastic (Fragment) OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.730e-15
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 2
Query:    2 GGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVKGYTY 148
            GG PENVKAAQ+ LL RAK+NSLAQLGKY G+GESEEAKK +FVKGY+Y
Sbjct:  308 GGLPENVKAAQEALLFRAKSNSLAQLGKYYGDGESEEAKKELFVKGYSY 356          
BLAST of CX300537 vs. ExPASy Swiss-Prot
Match: ALFC3_ARATH (Probable fructose-bisphosphate aldolase 3, chloroplastic OS=Arabidopsis thaliana GN=FBA3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.574e-15
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    5 GRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVKGYTY 148
            G+PE ++A+Q  LL RAKANSLAQLGKY+ EGE+E+AKKGMFVKGYTY
Sbjct:  344 GKPEKIEASQKALLVRAKANSLAQLGKYSAEGENEDAKKGMFVKGYTY 391          
BLAST of CX300537 vs. ExPASy Swiss-Prot
Match: ALFC2_PEA (Fructose-bisphosphate aldolase 2, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.054e-12
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 2
Query:    2 GGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVKGYTY 148
            GG PENVKAAQ+ LL RAK+NSLAQLGKY G+GESEEAKK    +GY+Y
Sbjct:  302 GGLPENVKAAQEALLFRAKSNSLAQLGKYIGDGESEEAKKDC-CQGYSY 349          
The following BLAST results are available for this feature:
BLAST of CX300537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ALFC2_ARATH5.746e-1991.84Probable fructose-bisphosphate aldolase 2, chlorop... [more]
ALFC1_ARATH2.183e-1889.80Probable fructose-bisphosphate aldolase 1, chlorop... [more]
ALFC_ORYSJ7.766e-1679.59Fructose-bisphosphate aldolase, chloroplastic OS=O... [more]
ALFC1_PEA1.730e-1579.59Fructose-bisphosphate aldolase 1, chloroplastic (F... [more]
ALFC3_ARATH6.574e-1575.00Probable fructose-bisphosphate aldolase 3, chlorop... [more]
ALFC2_PEA3.054e-1273.47Fructose-bisphosphate aldolase 2, chloroplastic OS... [more]
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Properties
Property NameValue
Genbank descriptionC07011D06SK SaltLeaf1 Citrus clementina cDNA clone C07011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300537 ID=CX300537; Name=CX300537; organism=Citrus clementina; type=EST; length=360bp
GGGTGGCAGGCCAGAGAATGTCAAGGCAGCTCAGGATACTCTGCTCACCC
GTGCCAAGGCCAACTCACTTGCTCAGCTCGGCAAGTACACTGGCGAGGGA
GAATCAGAGGAGGCCAAGAAAGGAATGTTCGTCAAGGGATACACCTACTA
AATTTGTTAGCACGAAGATCATAAGAATGGTGAAGAAATTTGAAATGAGT
AGTCATCTCAAATGTGTTAATGCTTTATAGCCGTGCTTTGGAGACTATTT
TTGTTCATGATTACATGTACTTTTAGCAACTTAATAAACTTCTTGCCAAT
GAGATGAGTTAGTGTGTATTTATGATGAGATTAAGTTCTCTGTAAAAAAA
AAAAAAAAAA
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