CX300538

Overview
NameCX300538
Unique NameCX300538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7316 contig Ccv1_Contig7316:1166..1683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDA1_RICCO (Phospholipase D alpha 1 OS=Ricinus communis GN=PLD1 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.782e-42
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 2
Query:    2 YEHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 271
            YEHLGMLD++FL PE  ECV+KVNQ+AE+YWDLYSSE+LEHDLPGHLLRYPIGV+ EGDVTELPGTEFFPDTKARVLG KSDY+PP+LTT
Sbjct:  719 YEHLGMLDESFLNPESEECVRKVNQMAEKYWDLYSSETLEHDLPGHLLRYPIGVASEGDVTELPGTEFFPDTKARVLGAKSDYLPPILTT 808          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDA2_ARATH (Phospholipase D alpha 2 OS=Arabidopsis thaliana GN=PLDALPHA2 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.710e-40
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 2
Query:    2 YEHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 271
            YEHLGMLD+TFL P   EC++KVN++A++YWDLYSSESLEHDLPGHLLRYPIG++ EG++TELPG EFFPDTKAR+LG KSDYMPP+LTT
Sbjct:  721 YEHLGMLDETFLDPSSQECIQKVNRVADKYWDLYSSESLEHDLPGHLLRYPIGIASEGNITELPGCEFFPDTKARILGVKSDYMPPILTT 810          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDA1_TOBAC (Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PLD1 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 3.539e-40
Identity = 74/90 (82.22%), Postives = 82/90 (91.11%), Query Frame = 2
Query:    2 YEHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 271
            YEHLGMLD+TFL PE  ECV KVN++A++YWDLYSSESLE DLPGHLLRYPIGV+ EGDVTELPG E FPDTKARVLGTKSDY+PP+LTT
Sbjct:  719 YEHLGMLDETFLHPESEECVSKVNRMADKYWDLYSSESLERDLPGHLLRYPIGVASEGDVTELPGAEHFPDTKARVLGTKSDYLPPILTT 808          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDA1_ARATH (Phospholipase D alpha 1 OS=Arabidopsis thaliana GN=PLDALPHA1 PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 3.539e-40
Identity = 71/90 (78.89%), Postives = 83/90 (92.22%), Query Frame = 2
Query:    2 YEHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 271
            YEHLGMLD+TFL P   EC++KVN+I+++YWD YSSESLEHDLPGHLLRYPIGV+ EGD+TELPG EFFPDTKAR+LGTKSDY+PP+LTT
Sbjct:  721 YEHLGMLDETFLDPSSLECIEKVNRISDKYWDFYSSESLEHDLPGHLLRYPIGVASEGDITELPGFEFFPDTKARILGTKSDYLPPILTT 810          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDA1_BRAOC (Phospholipase D alpha 1 OS=Brassica oleracea var. capitata GN=PLD1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.037e-40
Identity = 71/90 (78.89%), Postives = 82/90 (91.11%), Query Frame = 2
Query:    2 YEHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 271
            YEHLGMLD+TFL P   EC++KVN+I+++YWDLYSSESLEHDLPGHLLRYP+ V GEGDVTE PG EFFPDTKAR+LGTKSDY+PP+LTT
Sbjct:  721 YEHLGMLDETFLDPSSVECIEKVNRISDKYWDLYSSESLEHDLPGHLLRYPVDVDGEGDVTEFPGFEFFPDTKARILGTKSDYLPPILTT 810          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDA1_VIGUN (Phospholipase D alpha 1 OS=Vigna unguiculata GN=PLD1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.111e-39
Identity = 71/90 (78.89%), Postives = 81/90 (90.00%), Query Frame = 2
Query:    2 YEHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 271
            YEHLGML DTF +PE  EC+ KVNQIA++YWDLYSSESLE DLPGHLLRYPIGV+ EG+VTELPG EFFPDTKAR+LG K+DY+PP+LTT
Sbjct:  720 YEHLGMLHDTFQRPESEECINKVNQIADKYWDLYSSESLERDLPGHLLRYPIGVASEGEVTELPGFEFFPDTKARILGAKADYLPPILTT 809          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDA1_PIMBR (Phospholipase D alpha 1 OS=Pimpinella brachycarpa GN=PLD1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.644e-37
Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = 2
Query:    2 YEHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 271
            YEHLGMLDDT   PE  +CV+KVN +A++YWDLYSSE+LE+DLPGHLLRYPI V+ EG+VTELPGTEFFPDTKARVLG KSD++PP+LTT
Sbjct:  719 YEHLGMLDDTLALPESVDCVQKVNTVADKYWDLYSSETLENDLPGHLLRYPIAVASEGNVTELPGTEFFPDTKARVLGAKSDFLPPILTT 808          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDA2_BRAOC (Phospholipase D alpha 2 OS=Brassica oleracea var. capitata GN=PLD2 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.147e-37
Identity = 67/90 (74.44%), Postives = 79/90 (87.78%), Query Frame = 2
Query:    2 YEHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 271
            YEHLGMLD+TFL P   EC++KVN+IA++YWD YSSESLEHDLPGHLLRYPI V  EG++TELPG EFFPD+KAR+LG K DY+PP+LTT
Sbjct:  723 YEHLGMLDETFLDPSSLECIEKVNRIADKYWDFYSSESLEHDLPGHLLRYPISVDNEGNITELPGFEFFPDSKARILGNKVDYLPPILTT 812          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDA1_ORYSJ (Phospholipase D alpha 1 OS=Oryza sativa subsp. japonica GN=PLD1 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 6.908e-36
Identity = 66/90 (73.33%), Postives = 79/90 (87.78%), Query Frame = 2
Query:    2 YEHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 271
            YEHLGMLDD F +PE  ECV+KVN+IAE+YWD+YSS+ L+ DLPGHLL YPIGV+ +G VTELPG E+FPDT+ARVLG KSDYMPP+LT+
Sbjct:  723 YEHLGMLDDVFQRPESLECVQKVNRIAEKYWDMYSSDDLQQDLPGHLLSYPIGVASDGVVTELPGMEYFPDTRARVLGAKSDYMPPILTS 812          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDA1_MAIZE (Phospholipase D alpha 1 OS=Zea mays GN=PLD1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.022e-36
Identity = 66/90 (73.33%), Postives = 78/90 (86.67%), Query Frame = 2
Query:    2 YEHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 271
            YEHLGML+D F +PE  ECV+KVN++AE+YWDLYSS+ LE DLPGHLL YPIGV+ +G VTELPG E FPDT+ARVLG KSDY+PP+LTT
Sbjct:  723 YEHLGMLEDVFQRPESVECVQKVNEVAEKYWDLYSSDDLEQDLPGHLLSYPIGVTADGSVTELPGMENFPDTRARVLGNKSDYLPPILTT 812          
The following BLAST results are available for this feature:
BLAST of CX300538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PLDA1_RICCO3.782e-4284.44Phospholipase D alpha 1 OS=Ricinus communis GN=PLD... [more]
PLDA2_ARATH2.710e-4077.78Phospholipase D alpha 2 OS=Arabidopsis thaliana GN... [more]
PLDA1_TOBAC3.539e-4082.22Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PL... [more]
PLDA1_ARATH3.539e-4078.89Phospholipase D alpha 1 OS=Arabidopsis thaliana GN... [more]
PLDA1_BRAOC6.037e-4078.89Phospholipase D alpha 1 OS=Brassica oleracea var. ... [more]
PLDA1_VIGUN5.111e-3978.89Phospholipase D alpha 1 OS=Vigna unguiculata GN=PL... [more]
PLDA1_PIMBR1.644e-3776.67Phospholipase D alpha 1 OS=Pimpinella brachycarpa ... [more]
PLDA2_BRAOC2.147e-3774.44Phospholipase D alpha 2 OS=Brassica oleracea var. ... [more]
PLDA1_ORYSJ6.908e-3673.33Phospholipase D alpha 1 OS=Oryza sativa subsp. jap... [more]
PLDA1_MAIZE9.022e-3673.33Phospholipase D alpha 1 OS=Zea mays GN=PLD1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC07011D07SK SaltLeaf1 Citrus clementina cDNA clone C07011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300538 ID=CX300538; Name=CX300538; organism=Citrus clementina; type=EST; length=518bp
GTACGAGCACCTAGGCATGCTCGATGACACCTTCCTCCAGCCAGAATGTA
GCGAATGTGTTAAGAAGGTTAACCAGATTGCCGAACGGTATTGGGACCTG
TACTCCAGTGAGTCTCTTGAGCATGACTTGCCCGGTCACTTGCTCCGCTA
CCCCATTGGTGTTTCTGGTGAAGGAGATGTCACGGAGTTGCCAGGAACCG
AGTTCTTCCCCGACACCAAGGCTCGTGTTCTCGGTACCAAATCGGATTAT
ATGCCCCCAGTCCTGACCACCTGATGCTCTCCAGAGGGTGCCAAAAATAA
TTTCGTAGTTGCGAACTACCGGTTATGGTAGTATAGCAAATAATAAATGA
TGTGTATTAAAACCAACAGGTGTGGTATTGTTTTTCTGCTTTGGTTCAGA
GATGTGGTGTGATTTGGTGATATACTGACGGGAAACTTATTAAGTCTGTT
TATTTGTGCATTACGTTTAAATTGGTCCTAAATTTTACTTCTGTTAATCT
CTAAAAAAAAAAAAAAAA
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