CX300542

Overview
NameCX300542
Unique NameCX300542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10002 contig Ccv1_Contig10002:257..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300542 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 364.385 bits (934), Expect = 3.204e-100
Identity = 181/219 (82.65%), Postives = 199/219 (90.87%), Query Frame = 1
Query:    1 VSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 657
            VSTQLKNKNITTDVKVDTNSN++TTITVDEPAPGLK+IFSF+VPDQ+SGKVELQY HEYAGI+T IG TA+P+            ALGTDLSFDTATGNFTKCNAGLS++ +DLIASL LNDKGDT++ASYYH V P+TNTAVGAELTHSFSSNENTLTIGTQH LDPLT+VKARVN+YG+ASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLA+AL
Sbjct:   56 VSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVAL 274          
BLAST of CX300542 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 337.035 bits (863), Expect = 5.477e-92
Identity = 161/219 (73.52%), Postives = 189/219 (86.30%), Query Frame = 1
Query:    1 VSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 657
            V+TQLKNKN+TTD+KVDTNSNLFTTITVDE APGLK+I SF VPDQRSGK+E+QY H+YAGI T +G TANPI            ALGTD+SFDT TG+FTKCNAGLS+T+ DL+ASL LN+KGD L ASYYH VSPLT+TAVGAE+ HSFS+NEN +T+GTQH LDPLTSVKAR+NN+G+ASAL+QHEWRPKSLFT+SGEVDT++++K AK GLALAL
Sbjct:   56 VNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALAL 274          
BLAST of CX300542 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 306.99 bits (785), Expect = 6.070e-83
Identity = 151/219 (68.95%), Postives = 177/219 (80.82%), Query Frame = 1
Query:    1 VSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 657
            V+TQLKNKNITTD+KVDTNSNLFTTITV+EPAPG+K+I SF VP+Q SGKVELQY HEYAGIS+ +G  ANPI            A G D+SFDT  G  TK NA +++   DLI SLTLN+KGD L+ASYYH ++PL+NTAVG +++H FS+ ENT T+GTQHALDPLT+VK RV N G+ASALIQHEWRPKSL TIS EVDT+AIEKSAKIGL+LAL
Sbjct:   56 VNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLAL 274          
BLAST of CX300542 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 304.294 bits (778), Expect = 3.934e-82
Identity = 153/219 (69.86%), Postives = 178/219 (81.28%), Query Frame = 1
Query:    1 VSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 657
            V+ Q + KNITTD+KV T+S    T TVDE APGL+SIFSF VPDQ SGKVELQY HEYAGIST +G T NP             A+GTD+SFDT +GNFTK NAGLS+T  DLIASLT+NDKGD LNASYYHIV+PL NTAVGAE++H  SS ++T+T+GTQH+LDPLTSVKARVN+ G ASALIQHEW+PKS FTISGEVDT++I+KSAK+GLALAL
Sbjct:   56 VAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALAL 274          
BLAST of CX300542 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 294.664 bits (753), Expect = 3.117e-79
Identity = 146/219 (66.67%), Postives = 178/219 (81.28%), Query Frame = 1
Query:    1 VSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 657
            + +Q+KNKNIT DVK +++SN+ TT+TVDE  PGLKSI SF VPDQRSGK ELQY H+YAG+S  IG TA+P+            A+G D+S DTATGN TK NAGLS+++ DLIASL LN+KGD+L ASYYHIV+  + TAVGAELTHSFSSNEN+LT GTQH LDPLT VKAR NN G+ASAL+QHEWRPKS++TIS EVDT+AI+KS+K+G+A+AL
Sbjct:   55 IQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNH-SATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVAL 272          
BLAST of CX300542 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.448e-76
Identity = 147/220 (66.82%), Postives = 174/220 (79.09%), Query Frame = 1
Query:    1 VSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 657
            + +Q+KNKNIT DVK ++ SN+ TTIT D+  APGLK+I SF VPDQ+SGKVELQY H+YAGI+  IG TANP+            A+G D+S DTAT NF K NA LSYT+ DLIASL LN+KGD+L ASYYHIV   + TAVGAELTHSFSSNEN+LT GTQH LDPLT VKAR+NN G+ASALIQHE+ PKSL TIS EVDT+AIEKS+K+G+A+AL
Sbjct:   55 IQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEK-SGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIAL 273          
BLAST of CX300542 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 279.256 bits (713), Expect = 1.355e-74
Identity = 137/219 (62.56%), Postives = 172/219 (78.54%), Query Frame = 1
Query:    1 VSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 657
            V+TQ+KN N T DVKV T+S+L TT+T DEPAPGLK I    +PD +SGK E+QY H+YAGIST +GFTA PI            +LGTD++++T +GNF   NAG ++T  DL ASL LNDKG+ LNASYY IVSP  +T VGAE++H+F++ EN +T+GTQHALDPLT+VKARVNN G A+ALIQHEWRPKS FT+SGEVD++AI+KSAK+G+ALAL
Sbjct:   56 VATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSP--STVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALAL 272          
BLAST of CX300542 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 4.820e-72
Identity = 134/220 (60.91%), Postives = 165/220 (75.00%), Query Frame = 1
Query:    7 TQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALSH 663
            TQ+KNK +T DVK ++ S+L TTITVDE   PGLKSI + +VPDQRSGK+E QY HEYAG++  +G  +NP+            ++G D+SFDTAT +FTK NA LS T  DLIASL LN+ GDTL ASYYH+V   + TAVGAEL+HS S NE+TL  G+QH+LDP T++K R NNYG ASAL+QHEWRPKS  TISG+VDT+AIEKS K+GL+L L H
Sbjct:   58 TQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLKH 277          
BLAST of CX300542 vs. ExPASy Swiss-Prot
Match: VDAC2_XENLA (Voltage-dependent anion-selective channel protein 2 OS=Xenopus laevis GN=vdac2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 62/216 (28.70%), Postives = 89/216 (41.20%), Query Frame = 1
Query:   28 ITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIVPD---QRSGKVELQYQHEYAGISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALAL 657
            +T   K +T++ L T I + D+ A GLK  F         ++SGKV+  Y+ EY  +   + F  A P               G  ++FD+A    TK N  + Y   D      +ND G     S Y  VS    TAV   L  +  +N     I  ++ LD   ++ A+VNN            RP    T+S  VD + I     K+GL L L
Sbjct:   68 LTFTEKWNTDNTLGTEIAIEDQIAKGLKLTFDTTFSPNTGKKSGKVKAAYKQEYVNLGCDVDFDFAGPAIHGSAVVGYEGWLAGYQMTFDSAKSKLTKNNFAVGYKTGDFQLHTNVND-GSEFAGSIYQKVSDKMETAV--NLAWTSGNNSTRFGIAAKYQLDSHAAISAKVNNSSLVGVGYTQTLRPGVKLTLSALVDGKNINAGGHKLGLGLEL 280          
BLAST of CX300542 vs. ExPASy Swiss-Prot
Match: VDAC2_MELGA (Voltage-dependent anion-selective channel protein 2 OS=Meleagris gallopavo GN=VDAC2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 60/216 (27.78%), Postives = 89/216 (41.20%), Query Frame = 1
Query:   28 ITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIVPD---QRSGKVELQYQHEYAGISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALAL 657
            +T   K +T++ L T I + D+ A GLK  F         ++SGK++  Y+ E   +   + F  A P               G  ++FD+A    T+ N  + Y   D      +ND G     S Y  VS    TAV   L  +  SN     I  ++ LD   S+ A+VNN            RP    T+S  +D ++I     K+GL L L
Sbjct:   68 LTFTEKWNTDNTLGTEIAIEDQIAKGLKLTFDTTFSPNTGKKSGKIKSAYKRECLNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFSVGYKTGDFQLHTNVND-GSEFGGSIYQKVSDNLETAV--NLAWTAGSNSTRFGIAAKYKLDSTASISAKVNNSSLVGVGYTQTLRPGVKLTLSALIDGKSINAGGHKLGLGLEL 280          
The following BLAST results are available for this feature:
BLAST of CX300542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
VDAC2_SOLTU3.204e-10082.65Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU5.477e-9273.52Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA6.070e-8368.95Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ARATH3.934e-8269.86Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC1_ORYSJ3.117e-7966.67Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT1.448e-7666.82Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC2_ARATH1.355e-7462.56Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC_MAIZE4.820e-7260.91Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC2_XENLA1.631e-1128.70Voltage-dependent anion-selective channel protein ... [more]
VDAC2_MELGA4.745e-1127.78Voltage-dependent anion-selective channel protein ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07011D12SK SaltLeaf1 Citrus clementina cDNA clone C07011D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300542 ID=CX300542; Name=CX300542; organism=Citrus clementina; type=EST; length=684bp
GTCAGCACTCAGTTGAAGAACAAGAACATCACTACTGATGTTAAAGTTGA
TACTAACTCTAATCTTTTTACAACCATCACTGTCGATGAGCCTGCTCCTG
GACTCAAGTCAATCTTTAGCTTTATCGTTCCTGATCAGAGATCTGGCAAG
GTGGAACTCCAATATCAGCATGAATATGCTGGAATAAGCACTGGCATTGG
ATTCACTGCAAATCCCATTGTTAACTTTTCTGGTGTGGTTGGAAACAATT
CTGTTGCTCTTGGGACTGATCTCTCATTTGATACTGCCACTGGCAACTTC
ACCAAGTGCAATGCGGGGCTGAGCTATACACATACTGACCTCATTGCTTC
CCTGACATTGAATGACAAAGGTGACACCCTTAATGCTTCCTACTACCACA
TTGTAAGCCCACTGACCAATACCGCTGTTGGGGCGGAGCTGACCCATAGC
TTTTCAAGCAACGAGAACACTCTGACAATCGGAACTCAGCATGCTCTTGA
TCCTTTGACCTCGGTGAAGGCCCGTGTGAACAACTATGGCAGGGCAAGTG
CTCTTATCCAGCACGAGTGGCGTCCCAAATCTCTATTTACTATCTCAGGA
GAGGTAGACACCAGGGCCATTGAAAAGAGTGCTAAAATTGGGCTGGCGTT
AGCTCTCAGCCATAGGCTAAGCATTAATCTTGGC
back to top