CX300544

Overview
NameCX300544
Unique NameCX300544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:340..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 5.020e-60
Identity = 94/108 (87.04%), Postives = 104/108 (96.30%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631
            TH PGDR LT+GLKGDPTYLVVE DKTLA++GINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAH ++++GKVVFVPWTETDFRTGEAPWW+
Sbjct:  122 THAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWS 229          

HSP 2 Score: 36.965 bits (84), Expect = 5.020e-60
Identity = 16/24 (66.67%), Postives = 19/24 (79.17%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GT AKDA+GND+IAA+WL   A G
Sbjct:  103 GTIAKDALGNDVIAAEWLKTHAPG 126          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.579e-58
Identity = 95/109 (87.16%), Postives = 102/109 (93.58%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 631
            THGPGDR LT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYN QGRVVRGPAPLSLALAHA+I E GKV+FVPW ETDFRTG+APWW+
Sbjct:  121 THGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADIDEAGKVLFVPWVETDFRTGDAPWWS 229          

HSP 2 Score: 35.4242 bits (80), Expect = 1.579e-58
Identity = 13/18 (72.22%), Postives = 17/18 (94.44%), Query Frame = -3
Query:  634 GTTAKDAIGNDIIAADWL 687
            GT AKDA+GND++AA+WL
Sbjct:  102 GTPAKDALGNDVVAAEWL 119          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.580e-58
Identity = 95/108 (87.96%), Postives = 103/108 (95.37%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631
            TH PG+R LT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTGEAPWWA
Sbjct:  121 THPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEAPWWA 228          

HSP 2 Score: 34.6538 bits (78), Expect = 1.580e-58
Identity = 13/18 (72.22%), Postives = 17/18 (94.44%), Query Frame = -3
Query:  634 GTTAKDAIGNDIIAADWL 687
            GT AKDA+GND+IA++WL
Sbjct:  102 GTPAKDALGNDVIASEWL 119          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 5.950e-58
Identity = 93/108 (86.11%), Postives = 102/108 (94.44%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631
            TH PG R LT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQG+VVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTG++PWWA
Sbjct:  123 THSPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGDSPWWA 230          

HSP 2 Score: 32.3426 bits (72), Expect = 5.950e-58
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = -3
Query:  613 GTTAKDAIGNDIIAADWLTRTALGT 687
            GT AKDA GND++  +WL   + GT
Sbjct:  104 GTIAKDANGNDVVVTEWLKTHSPGT 128          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 7.758e-58
Identity = 94/108 (87.04%), Postives = 102/108 (94.44%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631
            TH PG+R LT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTGE PWWA
Sbjct:  121 THPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEDPWWA 228          

HSP 2 Score: 34.6538 bits (78), Expect = 7.758e-58
Identity = 13/18 (72.22%), Postives = 17/18 (94.44%), Query Frame = -3
Query:  634 GTTAKDAIGNDIIAADWL 687
            GT AKDA+GND+IA++WL
Sbjct:  102 GTPAKDALGNDVIASEWL 119          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.319e-57
Identity = 93/108 (86.11%), Postives = 102/108 (94.44%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631
            THGP DR LT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQGRVVRGPAPLSLAL HA++++GKV+FVPW ETDFRTG+ PWWA
Sbjct:  118 THGPNDRTLTQGLKGDPTYLVVEADKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGDNPWWA 225          

HSP 2 Score: 29.261 bits (64), Expect = 1.319e-57
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = -3
Query:  634 GTTAKDAIGNDIIAADWL 687
            G  AKD +GND++A +WL
Sbjct:   99 GQVAKDKLGNDVLAEEWL 116          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.101e-56
Identity = 90/107 (84.11%), Postives = 100/107 (93.46%), Query Frame = -2
Query:  311 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 631
            THGP DR L +GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL HA++++GKVVFVPW ETDFRTG+ PWW
Sbjct:  115 THGPNDRTLAQGLKGDPTYLVVESDKTLATYGINAVCTHLGCVVPWNAAENKFLCPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVVFVPWVETDFRTGDNPWW 221          

HSP 2 Score: 30.0314 bits (66), Expect = 1.101e-56
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = -3
Query:  634 GTTAKDAIGNDIIAADWL 687
            G  AKD +GNDI+  DWL
Sbjct:   96 GVAAKDKLGNDILVEDWL 113          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.871e-56
Identity = 91/110 (82.73%), Postives = 102/110 (92.73%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHAN--IENGKVVFVPWTETDFRTGEAPWWA 631
            TH PGDR LT+GLKGDPTYLVVEKD+TLA++ INAVCTHLGCVVP+N AENKFICPCHGSQYN+QGRVVRGPAPLSLALAH +  +E+GKVVFVPW ETDFRTG+APWW+
Sbjct:  121 THAPGDRTLTQGLKGDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVGVEDGKVVFVPWVETDFRTGDAPWWS 230          

HSP 2 Score: 35.8094 bits (81), Expect = 1.871e-56
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GT AKDA+GND++A +WL   A G
Sbjct:  102 GTVAKDAVGNDVVATEWLKTHAPG 125          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.404e-56
Identity = 90/109 (82.57%), Postives = 100/109 (91.74%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 631
            THGPGDR L +GL+GDPTYLVVE D++LA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL+H +I E GKVVFVPW ETDFRTGE PWW+
Sbjct:  122 THGPGDRTLAQGLRGDPTYLVVENDRSLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNNQGKVVRGPAPLSLALSHCDISEEGKVVFVPWVETDFRTGENPWWS 230          

HSP 2 Score: 32.7278 bits (73), Expect = 5.404e-56
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -3
Query:  634 GTTAKDAIGNDIIAADWL 687
            G  AKDA+GNDI+AA WL
Sbjct:  103 GIVAKDAVGNDIVAAAWL 120          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_MICAN (Cytochrome b6-f complex iron-sulfur subunit OS=Microcystis aeruginosa (strain NIES-843) GN=petC PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 7.569e-52
Identity = 85/109 (77.98%), Postives = 98/109 (89.91%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 631
            +H  GDR L +GLKGDPTYLVV++DKTLA+YGINAVCTHLGCVVPWN++E KF+CPCHGSQYN +G+VVRGPAPLSLALAHAN+ +N KVVF  WTETDFRTGE PWW+
Sbjct:   71 SHNAGDRTLAQGLKGDPTYLVVQEDKTLANYGINAVCTHLGCVVPWNASEEKFMCPCHGSQYNAEGKVVRGPAPLSLALAHANVTDNDKVVFSTWTETDFRTGEEPWWS 179          

HSP 2 Score: 30.8018 bits (68), Expect = 7.569e-52
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = -3
Query:  631 GTTAKDAIGNDIIAADWLT 687
            G TAKDA+GND+I + +LT
Sbjct:   52 GVTAKDALGNDVIVSQFLT 70          
The following BLAST results are available for this feature:
BLAST of CX300544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_SPIOL5.020e-6087.04Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ARATH1.579e-5887.16Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIB_TOBAC1.580e-5887.96Cytochrome b6-f complex iron-sulfur subunit 2, chl... [more]
UCRIA_SOLTU5.950e-5886.11Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_TOBAC7.758e-5887.04Cytochrome b6-f complex iron-sulfur subunit 1, chl... [more]
UCRIA_ORYSJ1.319e-5786.11Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_WHEAT1.101e-5684.11Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_PEA1.871e-5682.73Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG5.404e-5682.57Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_MICAN7.569e-5277.98Cytochrome b6-f complex iron-sulfur subunit OS=Mic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07011E03SK SaltLeaf1 Citrus clementina cDNA clone C07011E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300544 ID=CX300544; Name=CX300544; organism=Citrus clementina; type=EST; length=698bp
AACTAGTCTCGAGTTTTTTTTTTTTTTTTTTACTTAATAAATGATAAAAA
CTTATATCCAACGTTGAAGCTGTAGCATTACATTGTTGAGCGTATGAATT
TTTGAGATACAAAGAATGAATGGATAAGAGAAAATTGTCAAGATTGCCAA
GATTACAAGATAGCATGATTCAAGCCAAGTAGCTTTACATGTTGTAAGCT
TCATTCTGATAAAGCATGTTCCGTTACAGTATGTTTATGCAGTACGGCAA
AGCAAACCGACCGGCCAAAACTTGAATATTGAAAGCACAGGCACCGGAAC
AAGTTTAAGCCCACCATGGAGCTTCACCAGTTCTGAAATCTGTTTCCGTC
CATGGAACGAAGACTACCTTACCATTTTCAATGTTGGCATGAGCCAATGC
CAATGACAATGGAGCAGGCCCTCTCACAACTCTTCCTTGGTTATTGTATT
GGGATCCGTGGCAGGGACAGATGAACTTGTTCTCAGCTGAATTCCATGGC
ACCACACATCCAAGGTGAGTGCAGACAGCATTGATTCCATATGATGCAAG
TGTTTTGTCTTTTTCCACAACAAGGTAGGTTGGATCTCCCTTCAATCCTT
CGGTGAGGGNTCGGTCCCCAGGGCCGTGCGTGTTAGCCAATCAGCGGCAA
TGATGTCATTGCCAATGGCATCCTTGGCAGTAGTACCACACCAGCACT
back to top