CX300545

Overview
NameCX300545
Unique NameCX300545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9589 contig Ccv1_Contig9589:41..597. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX300545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
UBIQ_WHEAT2.230e-3397.26Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN2.230e-3397.26Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU2.230e-3397.26Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC2.230e-3397.26Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR2.230e-3397.26Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA2.230e-3397.26Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ2.230e-3397.26Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY2.230e-3397.26Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE2.230e-3397.26Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO2.230e-3397.26Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07011E05SK SaltLeaf1 Citrus clementina cDNA clone C07011E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300545 ID=CX300545; Name=CX300545; organism=Citrus clementina; type=EST; length=557bp
CTTCGTGAAAACCCTAACCGGAATGACCATAACTCTCGATGTCGAGAGCA
GCGACACCATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATT
CCCCCGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGATGG
GCGTACCTTGGCTGATTACAATATTCAGAAAGAATCCACTCTTCATTTGG
TGCTGAGGCTTAGGGGAGGTATCATTGAGCCTTCATTGATGGCTTTGGCT
CGTAAATACAATCAGGATAAGATGATTTGCCGCAAATGTTATGCTCGTCT
GCATCCCAGGGCTGTAAATTGCCGGAAGAAGAAATGTGGCCACAGCAATC
AGTTGAGGCCTAAGAAGAAGATCAAGTAGACCACTTGCCTTAGTCATGAT
ATGTGCCTTCAGAGAGACATTCCAATTATGAGATGTATTTTGTTTGTTTC
TGAATAGGATTTGGGATTTGAATTAAGCGATCATCTAAGTTGGATTGAAG
TTGATTCAGTTCAAGTGCAATTCTGTTAAACTTTTACCGTAAAAAAAAAA
AAAAAAA
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