CX300548

Overview
NameCX300548
Unique NameCX300548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length452
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig175 contig Ccv1_Contig175:871..1322. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300548 vs. ExPASy Swiss-Prot
Match: TC753_ARATH (Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 8.069e-31
Identity = 62/69 (89.86%), Postives = 63/69 (91.30%), Query Frame = 1
Query:    7 ENTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDHNTGTGALFFRFGER 213
            +NTHVYAFVEHGNDLGSSKDVKGNPT VYRR G GSSYG G KLGLVRAEYAVDHN GTGALFFRFGER
Sbjct:  749 KNTHVYAFVEHGNDLGSSKDVKGNPTAVYRRTGQGSSYGAGVKLGLVRAEYAVDHNNGTGALFFRFGER 817          
BLAST of CX300548 vs. ExPASy Swiss-Prot
Match: TOC75_PEA (Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.390e-29
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 1
Query:    7 ENTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDHNTGTGALFFRFGER 213
            + THVYAF EHG DLGSSKDVKGNPT VYRRMG GSSYG G KLGLVRAEYAVDHN+GTGA+FFRFGER
Sbjct:  740 KGTHVYAFAEHGTDLGSSKDVKGNPTVVYRRMGQGSSYGAGMKLGLVRAEYAVDHNSGTGAVFFRFGER 808          
BLAST of CX300548 vs. ExPASy Swiss-Prot
Match: TC754_ARATH (Protein TOC75-4, chloroplastic OS=Arabidopsis thaliana GN=TOC75-4 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.552e-29
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 1
Query:    7 ENTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDHNTGTGALFFRFGER 213
            +NTHVYAF EHGNDLGSSKDVKGNPT +YR+MGHGSSYG+G KLG+VRAEY V HN GTGALF RFGER
Sbjct:  327 KNTHVYAFAEHGNDLGSSKDVKGNPTGLYRKMGHGSSYGLGVKLGMVRAEYTVRHNRGTGALFLRFGER 395          
BLAST of CX300548 vs. ExPASy Swiss-Prot
Match: TOC75_ORYSJ (Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica GN=TOC75 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 6.393e-28
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 1
Query:   10 NTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDHNTGTGALFFRFGER 213
            NT+VY FVEHG DLGSSKDVKGNPTE +RR+GHGSSYG+G KLGLVR EY VDHN GTG +FFRFGER
Sbjct:  749 NTYVYGFVEHGTDLGSSKDVKGNPTEFFRRVGHGSSYGLGVKLGLVRGEYIVDHNAGTGTVFFRFGER 816          
The following BLAST results are available for this feature:
BLAST of CX300548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TC753_ARATH8.069e-3189.86Protein TOC75-3, chloroplastic OS=Arabidopsis thal... [more]
TOC75_PEA3.390e-2985.51Protein TOC75, chloroplastic OS=Pisum sativum GN=T... [more]
TC754_ARATH7.552e-2982.61Protein TOC75-4, chloroplastic OS=Arabidopsis thal... [more]
TOC75_ORYSJ6.393e-2880.88Protein TOC75, chloroplastic OS=Oryza sativa subsp... [more]
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Properties
Property NameValue
Genbank descriptionC07011E09SK SaltLeaf1 Citrus clementina cDNA clone C07011E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300548 ID=CX300548; Name=CX300548; organism=Citrus clementina; type=EST; length=452bp
TCCTGTGAAAACACGCATGTGTATGCTTTTGTTGAGCATGGCAATGATCT
AGGAAGTTCAAAGGATGTCAAGGGGAACCCGACAGAGGTCTACAGGCGAA
TGGGTCACGGTTCATCGTATGGTGTTGGTGCCAAGCTGGGGCTAGTTCGA
GCTGAGTATGCTGTTGATCATAACACTGGAACTGGTGCCTTATTCTTCAG
ATTTGGAGAGAGAAACTGAAGTGCAATTAGGCTTTACAGTTTTTTCTTTT
TACAGTCTGGCCAGCAGGTTTTCAAAGAATGTTAGCATGCTCGTCTGCGG
AGATGCTTGGACCTGGTTACATGATTTAATTTGAGAGACTTTTCTTTGCT
TTCAAATTTAATTTTTATTATTTTGTGCTTTATACATTATACACAAAGTT
TACCTGAGGTCAGTGACAAGAATAAGCCTGATACTGGGATGTTGCACTAA
AA
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