CX300549

Overview
NameCX300549
Unique NameCX300549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length263
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1083..1344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNF P K
Sbjct:  222 FSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNF P K
Sbjct:  224 FSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNF P K
Sbjct:  224 FSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNF P K
Sbjct:  222 FSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNF P K
Sbjct:  218 FSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNF P K
Sbjct:  163 FSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNF P K
Sbjct:  222 FSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNF P K
Sbjct:  212 FSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.093e-17
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNF PRK
Sbjct:  224 FSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.427e-17
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNF P K
Sbjct:  231 FSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          
The following BLAST results are available for this feature:
BLAST of CX300549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CB29_MAIZE8.366e-1893.18Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB24_TOBAC8.366e-1893.18Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL8.366e-1893.18Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC8.366e-1893.18Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ8.366e-1893.18Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_CUCSA8.366e-1893.18Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_ORYSJ8.366e-1893.18Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA8.366e-1893.18Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PETSP1.093e-1788.64Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB2B_PINSY1.427e-1790.91Chlorophyll a-b binding protein type 2 member 1B, ... [more]

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Properties
Property NameValue
Genbank descriptionC07011E10SK SaltLeaf1 Citrus clementina cDNA clone C07011E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300549 ID=CX300549; Name=CX300549; organism=Citrus clementina; type=EST; length=263bp
GTTCTCCACGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGAC
CGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCC
TGGGCCTACGCCACCAACTTTTGTCCCCGGAAAGTGAGCTTCGGTTGATA
AGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAG
CTCATGGAAGCTTTAATTTGAGTTGTGATTATTTACAAAATGCTTCAAAA
AAAAAAAAAAAAA
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