CX300551

Overview
NameCX300551
Unique NameCX300551
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1346 contig Ccv1_Contig1346:309..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300551 vs. ExPASy Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.931e-23
Identity = 48/56 (85.71%), Postives = 54/56 (96.43%), Query Frame = 1
Query:   67 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 234
            V++LR+ESYWY G+GSVVAVDQDP +RYPVVVRFNKVNYANVSTNNYALDE+EEVK
Sbjct:   88 VRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEVK 143          
BLAST of CX300551 vs. ExPASy Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.758e-23
Identity = 48/55 (87.27%), Postives = 54/55 (98.18%), Query Frame = 1
Query:   67 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 231
            V+I+R+ESYWY G+GSVVAVDQDPK+RYPVVVRFNKVNYANVSTNNYALDEI+EV
Sbjct:   70 VRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 124          
BLAST of CX300551 vs. ExPASy Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.951e-22
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1
Query:   67 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 234
            VKILR+ESYWY  +GSVVAVDQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEVK
Sbjct:   90 VKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEVK 145          
BLAST of CX300551 vs. ExPASy Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.548e-22
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1
Query:   67 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 234
            V+ILR+ESYWY G GSVVA DQDP +RYPVVVRFNKVNYANVSTNNYALDEIEEVK
Sbjct:   86 VRILRKESYWYKGTGSVVACDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK 141          
BLAST of CX300551 vs. ExPASy Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.683e-22
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 1
Query:   67 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 231
            VKILRRESYW+  +GSVVAVDQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEV
Sbjct:   87 VKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEV 141          
BLAST of CX300551 vs. ExPASy Swiss-Prot
Match: PSAE_HORVU (Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare GN=PSAE PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.680e-21
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 1
Query:   67 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 231
            VKILRRESYWYNG GSVV VDQDP +RYPVVVRF KVNYA VSTNNYALDEI+EV
Sbjct:   91 VKILRRESYWYNGTGSVVTVDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEIKEV 145          
BLAST of CX300551 vs. ExPASy Swiss-Prot
Match: PSAE_THEEB (Photosystem I reaction center subunit IV OS=Thermosynechococcus elongatus (strain BP-1) GN=psaE PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.268e-13
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   67 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYALDEIEEV 231
            VKILR ESYWYN +G+V +VDQ P  +YPV+VRF+KVNY       + V+TNN+AL E++EV
Sbjct:    8 VKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEV 69          
BLAST of CX300551 vs. ExPASy Swiss-Prot
Match: PSAE_SYNEN (Photosystem I reaction center subunit IV OS=Synechococcus elongatus naegeli GN=psaE PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.268e-13
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   67 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYALDEIEEV 231
            VKILR ESYWYN +G+V +VDQ P  +YPV+VRF+KVNY       + V+TNN+AL E++EV
Sbjct:    8 VKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEV 69          
BLAST of CX300551 vs. ExPASy Swiss-Prot
Match: PSAE_GLOVI (Photosystem I reaction center subunit IV OS=Gloeobacter violaceus GN=psaE PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.656e-13
Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   67 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 234
            V+ILR+ESYWY  +G+V +VD+  K+ YPV VRF KVNY+ ++TNN+ + E+EEV+
Sbjct:    9 VRILRKESYWYREVGTVASVDKSEKTIYPVTVRFEKVNYSGINTNNFGVSELEEVE 64          
BLAST of CX300551 vs. ExPASy Swiss-Prot
Match: PSAE_CYAPA (Photosystem I reaction center subunit IV OS=Cyanophora paradoxa GN=psaE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.824e-13
Identity = 33/56 (58.93%), Postives = 47/56 (83.93%), Query Frame = 1
Query:   67 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 234
            V+ILR+ESYWY  IG+V ++DQ    +YPV+VRF KVNY+NV++NN++LDE+ EV+
Sbjct:    8 VRILRKESYWYQEIGTVASIDQSG-IKYPVIVRFEKVNYSNVNSNNFSLDEVVEVE 62          
The following BLAST results are available for this feature:
BLAST of CX300551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PSAEB_NICSY3.931e-2385.71Photosystem I reaction center subunit IV B, chloro... [more]
PSAE_SPIOL8.758e-2387.27Photosystem I reaction center subunit IV, chloropl... [more]
PSAE2_ARATH1.951e-2285.71Photosystem I reaction center subunit IV B, chloro... [more]
PSAEA_NICSY2.548e-2287.50Photosystem I reaction center subunit IV A, chloro... [more]
PSAE1_ARATH9.683e-2285.45Photosystem I reaction center subunit IV A, chloro... [more]
PSAE_HORVU3.680e-2187.27Photosystem I reaction center subunit IV, chloropl... [more]
PSAE_THEEB1.268e-1358.06Photosystem I reaction center subunit IV OS=Thermo... [more]
PSAE_SYNEN1.268e-1358.06Photosystem I reaction center subunit IV OS=Synech... [more]
PSAE_GLOVI1.656e-1355.36Photosystem I reaction center subunit IV OS=Gloeob... [more]
PSAE_CYAPA2.824e-1358.93Photosystem I reaction center subunit IV OS=Cyanop... [more]

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Properties
Property NameValue
Genbank descriptionC07011E12SK SaltLeaf1 Citrus clementina cDNA clone C07011E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300551 ID=CX300551; Name=CX300551; organism=Citrus clementina; type=EST; length=517bp
CCAGCTGAAGGTGAAGCAGCTCCCAAGCCCAAGCCACCTCCGATTGGACC
CAAGAGAGGCGCCAAGGTTAAGATTCTCAGGAGGGAGTCCTACTGGTACA
ATGGCATTGGGTCTGTGGTTGCTGTTGACCAGGATCCCAAGAGTCGGTAC
CCAGTTGTGGTTCGATTCAACAAGGTTAACTATGCAAATGTATCAACGAA
CAACTATGCATTGGATGAGATCGAAGAAGTTAAATGAGTTATGTAATTTT
GATTTGCATATTATTCCCCGCTCTAGATTAAGCCTTTGTGTGCCAGGAAT
GTGTATTCTATTCTCCAAGTGAATTCTTCTTCTGTCTACTTCGCCATCAT
GTTTATGCTTATCCAACGAAAAGATGTTCACAACTTATACCGTACGGGCT
ACGATTAGGAACTGGTTATTCAAAACATTGAGGCTACCTCTTTATTTTCG
AAATTTGTTAGCTAAGGTGAATTTGAGGAACCAATCAGAGTTTTTACAAC
AAAAAAAAAAAAAAAAA
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