CX300553

Overview
NameCX300553
Unique NameCX300553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15207 contig Ccv1_Contig15207:671..1362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX300553 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.513e-76
Identity = 137/161 (85.09%), Postives = 151/161 (93.79%), Query Frame = 1 
Query:   16 GHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 498
            GHYAVQLAKL N HVTA+CGARNIEFVKSLGADEVLDYKTP+GAALKSPSG+KYDAV+HCA GIP+S FEPNL  NGKVIDITPGP+AM T+A+KK+T SKKQLVPLLLIPK ENL+F+V LVKEGK+KTVI+SKHPLSKAEDAWA+SIDGHATGKIIVEP
Sbjct:  169 GHYAVQLAKLANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGKKYDAVVHCANGIPFSVFEPNLSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLEFMVNLVKEGKVKTVIDSKHPLSKAEDAWAKSIDGHATGKIIVEP 329
[Close]
BLAST of CX300553 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.515e-70
Identity = 126/161 (78.26%), Postives = 144/161 (89.44%), Query Frame = 1 
Query:   16 GHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 498
            GHYAVQLAKLGNTHVTA+CGARN++FVK LGADEVLDYKTP+GA+L SPSG+KYD V+H A+GIPWSTFEPNL   GKVID+TPGP+AM+TFA KKLTFSKKQLVPLLLIPK  N +++V LVKE KLKTVI+SKHPLSK EDAW+  + GHATGKII+EP
Sbjct:  169 GHYAVQLAKLGNTHVTATCGARNLDFVKGLGADEVLDYKTPEGASLTSPSGKKYDYVVHGASGIPWSTFEPNLSEAGKVIDLTPGPTAMMTFAWKKLTFSKKQLVPLLLIPKIPNFEYVVNLVKEKKLKTVIDSKHPLSKGEDAWSRIMGGHATGKIIIEP 329
The following BLAST results are available for this feature:
BLAST of CX300553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
QORH_ARATH2.513e-7685.09Putative quinone-oxidoreductase homolog, chloropla... [more]
QORH_SPIOL3.515e-7078.26Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
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Properties
Property NameValue
Genbank descriptionC07011F02SK SaltLeaf1 Citrus clementina cDNA clone C07011F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300553 ID=CX300553; Name=CX300553; organism=Citrus clementina; type=EST; length=691bp
CCCCGGGCTGCAGGAGGTCACTATGCTGTTCAGTTGGCGAAGCTTGGAAA
CACGCACGTGACTGCCTCTTGTGGGGCTCGCAACATTGAATTTGTCAAGA
GTTTAGGGGCTGATGAGGTTCTTGATTACAAGACACCTGACGGGGCAGCT
CTAAAGAGTCCATCTGGTCGAAAATACGATGCAGTGATCCACTGTGCAAC
AGGGATTCCCTGGTCTACTTTTGAGCCTAATCTGGGCACAAATGGGAAGG
TGATAGATATCACTCCTGGCCCTAGTGCGATGCTGACTTTTGCTTTGAAG
AAACTTACCTTCTCCAAAAAGCAGCTGGTACCACTGCTGCTGATTCCCAA
GCGTGAGAACCTAGATTTTCTAGTTAAGTTGGTGAAGGAAGGAAAGCTTA
AGACAGTAATCAACTCAAAGCATCCCCTGAGCAAGGCTGAAGATGCTTGG
GCTGAGAGTATTGATGGCCATGCTACAGGGAAGATCATTGTGGAGCCATA
ACTTCATATGATTTGGTTTATTGTTGAAGTTTTATGTCACTGAAGAATTT
GTCTGTAGGACAAAGCTTATGGCAAATGTGCTGTTTCATCGTGTAATTTC
TTTCAACCAGATGCTGTGATTAGATCGTTTGTGTCTATTAGACGATATGT
TGTCCAAGTGATATGTGGATTTGGGTAAAAAAAAAAAAAAA
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