CX300554

Overview
NameCX300554
Unique NameCX300554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length225
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14413 contig Ccv1_Contig14413:1049..1273. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX300554 vs. ExPASy Swiss-Prot
Match: Y1669_ARATH (Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.659e-13
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 3 
Query:    3 GAKNAEQAAEFAGALGWRLTDEEVNELRSMASETKPVVSFPLENL 137
            GAKNAEQA EFAGA+GW LTD EV+ELRS+ASE KPVV FP+E L
Sbjct:  333 GAKNAEQAKEFAGAIGWSLTDNEVSELRSLASEIKPVVGFPVEYL 377
The following BLAST results are available for this feature:
BLAST of CX300554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1669_ARATH3.659e-1377.78Uncharacterized oxidoreductase At1g06690, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionC07011F03SK SaltLeaf1 Citrus clementina cDNA clone C07011F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300554 ID=CX300554; Name=CX300554; organism=Citrus clementina; type=EST; length=225bp
CAGGAGCCAAAAATGCAGAACAGGCTGCAGAATTCGCGGGTGCATTGGGA
TGGAGACTCACCGATGAAGAGGTGAACGAGCTGCGCTCAATGGCTTCAGA
GACAAAACCTGTCGTCAGTTTCCCTCTGGAGAATTTGTAGATTTTGTCAT
TTGACACAAACAAATTTATACAAGAAGCAGTTGAATTATGCACGATGTTC
TGAAATTCAAAAAAAAAAAAAAAAA
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