CX300558

Overview
NameCX300558
Unique NameCX300558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300558 vs. ExPASy Swiss-Prot
Match: FRI3_SOYBN (Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.063e-39
Identity = 82/110 (74.55%), Postives = 88/110 (80.00%), Query Frame = 1
Query:    1 NKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHGEEVVA 330
            NKRGGKVKLQSI+MPLSEFDH EKGDALYAME                H VA+KN+DVQLADF+ESE+L EQVEAIKKISEYVAQLRRVG+GHGVWHFDQMLLH E V A
Sbjct:  147 NKRGGKVKLQSIVMPLSEFDHEEKGDALYAMELALSLEKLTNEKLLNLHSVASKNNDVQLADFIESEFLGEQVEAIKKISEYVAQLRRVGKGHGVWHFDQMLLHEEGVAA 256          
BLAST of CX300558 vs. ExPASy Swiss-Prot
Match: FRI2_TOBAC (Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=FER2 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.388e-39
Identity = 83/110 (75.45%), Postives = 88/110 (80.00%), Query Frame = 1
Query:    1 NKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHGEEVVA 330
            NKRGGKVKLQSILMPLSEFDHAE+GDALYAME                H VA +N+DVQLADFVES+YL EQVEAIK ISEYVAQLRRVG+GHGVWHFDQMLL  EEVVA
Sbjct:  150 NKRGGKVKLQSILMPLSEFDHAEEGDALYAMELALSLAKLTNQKLLNLHAVATRNNDVQLADFVESKYLREQVEAIKMISEYVAQLRRVGKGHGVWHFDQMLLQEEEVVA 259          
BLAST of CX300558 vs. ExPASy Swiss-Prot
Match: FRI4_SOYBN (Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.215e-37
Identity = 77/104 (74.04%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    1 NKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 312
            NKRGGKVKLQSI+MPLS+FDHA+KGDAL+AME                H VA KN DVQLADFVE+EYL EQVEAIK+ISEYVAQLRRVG+GHGVWHFDQMLLH
Sbjct:  138 NKRGGKVKLQSIVMPLSDFDHADKGDALHAMELALSLEKLTNEKLLNLHSVATKNGDVQLADFVETEYLGEQVEAIKRISEYVAQLRRVGKGHGVWHFDQMLLH 241          
BLAST of CX300558 vs. ExPASy Swiss-Prot
Match: FRI2_VIGUN (Ferritin-2, chloroplastic OS=Vigna unguiculata GN=PFE2 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 6.446e-37
Identity = 76/104 (73.08%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    1 NKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 312
            N+RGGKVKLQSI+MPLSEFDHA+KGDAL+AME                H VA KN DVQLADFVESE+L EQVE+IK+ISEYVAQLRRVG+GHGVWHFDQMLLH
Sbjct:  141 NRRGGKVKLQSIVMPLSEFDHADKGDALHAMELALSLEKLTNEKLLHLHSVATKNGDVQLADFVESEFLGEQVESIKRISEYVAQLRRVGKGHGVWHFDQMLLH 244          
BLAST of CX300558 vs. ExPASy Swiss-Prot
Match: FRI2_ARATH (Ferritin-2, chloroplastic OS=Arabidopsis thaliana GN=FER2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.619e-35
Identity = 74/106 (69.81%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    1 NKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHGE 318
            NKRGG+VKLQSILMP+SEFDH EKGDAL+AME                  V  KN+DVQL DFVESE+L EQVEAIKKISEYVAQLRR+G+GHGVWHFDQMLL+ E
Sbjct:  147 NKRGGRVKLQSILMPVSEFDHEEKGDALHAMELALSLEKLTNEKLLKLQSVGVKNNDVQLVDFVESEFLGEQVEAIKKISEYVAQLRRIGKGHGVWHFDQMLLNDE 252          
BLAST of CX300558 vs. ExPASy Swiss-Prot
Match: FRI4_ARATH (Ferritin-4, chloroplastic OS=Arabidopsis thaliana GN=FER4 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.755e-34
Identity = 71/105 (67.62%), Postives = 81/105 (77.14%), Query Frame = 1
Query:    1 NKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHG 315
            NKRGG+VKLQSI+MPLSEF+H +KGDALY ME                H VA+KN+DV LADF+ESE+L EQVEAIK ISEYVAQLRRVG+GHG WHF+QMLL G
Sbjct:  155 NKRGGRVKLQSIVMPLSEFEHVDKGDALYGMELALSLEKLVNEKLLNLHSVASKNNDVHLADFIESEFLTEQVEAIKLISEYVAQLRRVGKGHGTWHFNQMLLEG 259          
BLAST of CX300558 vs. ExPASy Swiss-Prot
Match: FRI3_ARATH (Ferritin-3, chloroplastic OS=Arabidopsis thaliana GN=FER3 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.632e-33
Identity = 68/103 (66.02%), Postives = 79/103 (76.70%), Query Frame = 1
Query:    1 NKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLL 309
            NKRGG+VKLQ +++P SEFDH EKGDALYAME                H VA+KN DVQLADF+ES +L+EQVEAIKKISEYV+QLRR+G+GHG WHFDQ LL
Sbjct:  153 NKRGGRVKLQPMVLPQSEFDHPEKGDALYAMELALSLEKLVNEKLLNLHSVASKNDDVQLADFIESVFLNEQVEAIKKISEYVSQLRRLGKGHGTWHFDQELL 255          
BLAST of CX300558 vs. ExPASy Swiss-Prot
Match: FRI1_ARATH (Ferritin-1, chloroplastic OS=Arabidopsis thaliana GN=FER1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.632e-33
Identity = 66/104 (63.46%), Postives = 81/104 (77.88%), Query Frame = 1
Query:    1 NKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 312
            N+RGG+VKL  I+ P+SEF+HAEKGDALYAME                HKVA++N+D QLADFVESE+L EQ+EAIKKIS+Y+ QLR +G+GHGVWHFDQMLL+
Sbjct:  152 NQRGGRVKLHPIVSPISEFEHAEKGDALYAMELALSLEKLTNEKLLNVHKVASENNDPQLADFVESEFLGEQIEAIKKISDYITQLRMIGKGHGVWHFDQMLLN 255          
BLAST of CX300558 vs. ExPASy Swiss-Prot
Match: FRI1_TOBAC (Ferritin-1, chloroplastic OS=Nicotiana tabacum GN=FER1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.243e-32
Identity = 69/104 (66.35%), Postives = 79/104 (75.96%), Query Frame = 1
Query:    1 NKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 312
            NKRGG+VKL SI  P +EFDH EKGDALYAME                H VA++++DV LADF+ESE+L EQV+AIKKISEYVAQLRRVGQGHGVW FDQMLL+
Sbjct:  143 NKRGGRVKLLSICAPPTEFDHCEKGDALYAMELALCLEKLTNQRLLNLHAVASRSNDVHLADFLESEFLVEQVDAIKKISEYVAQLRRVGQGHGVWQFDQMLLN 246          
BLAST of CX300558 vs. ExPASy Swiss-Prot
Match: FRI1_MAIZE (Ferritin-1, chloroplastic OS=Zea mays GN=FER1 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 8.154e-32
Identity = 68/106 (64.15%), Postives = 78/106 (73.58%), Query Frame = 1
Query:    1 NKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHGE 318
            NKRGG+V+LQSI+ PL+EFDH EKGDALYAME                H VA + +D QL DF+ESE+L EQ EAI KIS+YVAQLRRVG+GHGVWHFDQMLL  E
Sbjct:  148 NKRGGRVRLQSIVTPLTEFDHPEKGDALYAMELALALEKLVNEKLHNLHGVATRCNDPQLTDFIESEFLEEQGEAINKISKYVAQLRRVGKGHGVWHFDQMLLEEE 253          
The following BLAST results are available for this feature:
BLAST of CX300558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
FRI3_SOYBN1.063e-3974.55Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1[more]
FRI2_TOBAC1.388e-3975.45Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=... [more]
FRI4_SOYBN2.215e-3774.04Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2[more]
FRI2_VIGUN6.446e-3773.08Ferritin-2, chloroplastic OS=Vigna unguiculata GN=... [more]
FRI2_ARATH4.619e-3569.81Ferritin-2, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI4_ARATH1.755e-3467.62Ferritin-4, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI3_ARATH9.632e-3366.02Ferritin-3, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI1_ARATH9.632e-3363.46Ferritin-1, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI1_TOBAC6.243e-3266.35Ferritin-1, chloroplastic OS=Nicotiana tabacum GN=... [more]
FRI1_MAIZE8.154e-3264.15Ferritin-1, chloroplastic OS=Zea mays GN=FER1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC07011F07SK SaltLeaf1 Citrus clementina cDNA clone C07011F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300558 ID=CX300558; Name=CX300558; organism=Citrus clementina; type=EST; length=522bp
AACAAACGAGGAGGTAAAGTGAAGCTGCAATCAATATTGATGCCTCTCTC
TGAGTTTGATCATGCTGAGAAAGGAGATGCTTTGTATGCCATGGAGCTTA
CGCTGTCTCTGGAGAAGCTAACAAATGAGAAACTCCTCAACTTGCACAAG
GTGGCCAACAAGAACCATGATGTGCAGTTGGCAGATTTCGTTGAAAGCGA
GTATTTACATGAGCAGGTAGAAGCCATCAAAAAGATATCTGAATATGTTG
CTCAGCTGAGAAGAGTTGGCCAGGGGCATGGTGTCTGGCACTTTGATCAA
ATGCTGCTCCATGGGGAGGAAGTCGTCGCATGATGGTGGACACATCTTGC
TTGTCACCTGACTATCCCTACTAAGGCTTGATCTTTATGTTGTTTTTGTT
TTTTTGTTCACTAGTTCTTAATTTAGAAACTTTCAGGCATGCAATTAGTG
CAGAAACTTTTACATTGTGTTGATAGATGAATGGCATATGGGGTACATCA
GGCTTAAAAAAAAAAAAAAAAA
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