CX300567

Overview
NameCX300567
Unique NameCX300567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length483
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4207 contig Ccv1_Contig4207:506..985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300567 vs. ExPASy Swiss-Prot
Match: PAP_CITUN (Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 8.209e-59
Identity = 125/160 (78.12%), Postives = 131/160 (81.88%), Query Frame = 2
Query:    2 NPTPAPTEALTLLNAKRILVYTSFSGLFPLLSRGTLPLARVEELSQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPETG*ILGTKELISHPLKAYSLQSKTQLHLLQRPFLANHLLKFSISNSNA*SWLLT 481
            NPTPAPTEALTLLNAK ILVYTSFSGLFPLLSRGTLPLARVEE+SQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPE    LG K  +S P K      +     + +   +   LKFSISNSNA SWLLT
Sbjct:  135 NPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPENVEFLGQKIDLS-PFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLT 293          
BLAST of CX300567 vs. ExPASy Swiss-Prot
Match: LIPC_SOLTU (Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 1.148e-52
Identity = 110/160 (68.75%), Postives = 124/160 (77.50%), Query Frame = 2
Query:    2 NPTPAPTEALTLLNAKRILVYTSFSGLFPLLSRGTLPLARVEELSQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPETG*ILGTKELISHPLKAYSLQSKTQLHLLQRPFLANHLLKFSISNSNA*SWLLT 481
            NP PAPTEALTLLN K IL YTSFSGLFPLLSRG LPL RVEE+SQTIDSE+FTVQNS+ FAGPLATTSISTNAKFEVRSPKRVQIKFEEG+IGTPQ+TDS+VLPE    LG K  +S P K      +     + +   +   +KF I+N+NA SWLLT
Sbjct:  138 NPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDLS-PFKGLITSVQDTASSVAKSISSQPPIKFPITNNNAQSWLLT 296          
BLAST of CX300567 vs. ExPASy Swiss-Prot
Match: LIPC_SOLDE (Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.148e-52
Identity = 110/160 (68.75%), Postives = 124/160 (77.50%), Query Frame = 2
Query:    2 NPTPAPTEALTLLNAKRILVYTSFSGLFPLLSRGTLPLARVEELSQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPETG*ILGTKELISHPLKAYSLQSKTQLHLLQRPFLANHLLKFSISNSNA*SWLLT 481
            NP PAPTEALTLLN K IL YTSFSGLFPLLSRG LPL RVEE+SQTIDSE+FTVQNS+ FAGPLATTSISTNAKFEVRSPKRVQIKFEEG+IGTPQ+TDS+VLPE    LG K  +S P K      +     + +   +   +KF I+N+NA SWLLT
Sbjct:  138 NPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDVS-PFKGLITSVQDTASSVVKSISSQPPIKFPITNNNAQSWLLT 296          
BLAST of CX300567 vs. ExPASy Swiss-Prot
Match: PAP2_BRACM (Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.112e-47
Identity = 100/160 (62.50%), Postives = 121/160 (75.62%), Query Frame = 2
Query:    2 NPTPAPTEALTLLNAKRILVYTSFSGLFPLLSRGTLPLARVEELSQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPETG*ILGTKELISHPLKAYSLQSKTQLHLLQRPFLANHLLKFSISNSNA*SWLLT 481
            NPTPAPT+AL LLN K IL YTSF GLFPLLSRG +PL +V+E+SQTIDS+NFTV+NS+ FAGPLATTSISTNAKFE+RSPKRVQIKFEEGVIGTPQ+TDS+ +PE    LG K  ++ P++      +     + R   +   LKFS+   +A SWLLT
Sbjct:  131 NPTPAPTDALFLLNGKWILAYTSFVGLFPLLSRGIVPLVKVDEISQTIDSDNFTVENSVLFAGPLATTSISTNAKFEIRSPKRVQIKFEEGVIGTPQLTDSIEIPEYVEFLGQKIDLT-PIRGLLTSVQDTATSVARTISSQPPLKFSLPGDSAQSWLLT 289          
BLAST of CX300567 vs. ExPASy Swiss-Prot
Match: PAP2_ARATH (Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.452e-47
Identity = 99/160 (61.88%), Postives = 120/160 (75.00%), Query Frame = 2
Query:    2 NPTPAPTEALTLLNAKRILVYTSFSGLFPLLSRGTLPLARVEELSQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPETG*ILGTKELISHPLKAYSLQSKTQLHLLQRPFLANHLLKFSISNSNA*SWLLT 481
            NPTPAPTEAL LLN K IL YTSF  LFPLLSRG +PL +V+E+SQTIDS+NFTVQNS++FAGPL T SISTNAKFE+RSPKRVQIKFE+GVIGTPQ+TDS+ +PE   +LG K +  +P++      +     + R   +   LKFS+   NA SWLLT
Sbjct:  122 NPTPAPTEALFLLNGKWILAYTSFVNLFPLLSRGIVPLIKVDEISQTIDSDNFTVQNSVRFAGPLGTNSISTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPEYVEVLGQK-IDLNPIRGLLTSVQDTASSVARTISSQPPLKFSLPADNAQSWLLT 280          
BLAST of CX300567 vs. ExPASy Swiss-Prot
Match: PAP2_ORYSJ (Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.236e-47
Identity = 103/161 (63.98%), Postives = 118/161 (73.29%), Query Frame = 2
Query:    2 NPTPAPTEALTLLNAKRILVYTSFSGLFPLLSRGTLP-LARVEELSQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPETG*ILGTKELISHPLKAYSLQSKTQLHLLQRPFLANHLLKFSISNSNA*SWLLT 481
            NPTPAPTEALTLLN K IL YTSFS LFPLL  G+LP L +VEE+SQTIDSENFTVQN I+F+GPLATTS+STNAKFEVRSPKRVQIKF+EG+IGTPQ+TDS+VLPE   + G + +   PLK      +     + R       LK  I   NA SWLLT
Sbjct:  131 NPTPAPTEALTLLNGKWILAYTSFSQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSGPLATTSVSTNAKFEVRSPKRVQIKFDEGIIGTPQLTDSIVLPEKFELFG-QNIDLTPLKGIFSSIENAASSVARTISGQPPLKIPIRTDNAESWLLT 290          
BLAST of CX300567 vs. ExPASy Swiss-Prot
Match: CHRC_CUCSA (Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 9.415e-47
Identity = 101/160 (63.12%), Postives = 119/160 (74.38%), Query Frame = 2
Query:    2 NPTPAPTEALTLLNAKRILVYTSFSGLFPLLSRGTLPLARVEELSQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPETG*ILGTKELISHPLKAYSLQSKTQLHLLQRPFLANHLLKFSISNSNA*SWLLT 481
            NPTPAPTEALTLLN K IL YT+F+GLFPLLSR  LPL +VEE+SQTIDSEN TVQNS+QF+GPLATTSI+TNAKFEVRSP RV IKFEEGVIGTPQ+TDS+V+P+    LG K +   P        +     + +   +   +KFSISN+   SWLLT
Sbjct:  135 NPTPAPTEALTLLNGKWILAYTTFAGLFPLLSRN-LPLVKVEEISQTIDSENLTVQNSVQFSGPLATTSITTNAKFEVRSPLRVHIKFEEGVIGTPQLTDSIVIPDNVDFLGQK-IDFTPFNGIISSLQDTASNVAKTISSQPPIKFSISNTRVESWLLT 292          
BLAST of CX300567 vs. ExPASy Swiss-Prot
Match: PAP1_ARATH (Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 7.970e-46
Identity = 96/160 (60.00%), Postives = 118/160 (73.75%), Query Frame = 2
Query:    2 NPTPAPTEALTLLNAKRILVYTSFSGLFPLLSRGTLPLARVEELSQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPETG*ILGTKELISHPLKAYSLQSKTQLHLLQRPFLANHLLKFSISNSNA*SWLLT 481
            NPTPAP EAL LLN K IL YTSF GLFPLLSR   PL +V+E+SQTIDS++FTVQNS++FAGP +TTS STNAKFE+RSPKRVQIKFE+GVIGTPQ+TDS+ +PE+  +LG K +  +P+K      +     + R       LKFS+ + N  SWLLT
Sbjct:  130 NPTPAPNEALFLLNGKWILAYTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSFTVQNSVRFAGPFSTTSFSTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPESVEVLGQK-IDLNPIKGLLTSVQDTASSVARTISNQPPLKFSLPSDNTQSWLLT 288          
BLAST of CX300567 vs. ExPASy Swiss-Prot
Match: PAP1_BRACM (Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.319e-45
Identity = 96/160 (60.00%), Postives = 118/160 (73.75%), Query Frame = 2
Query:    2 NPTPAPTEALTLLNAKRILVYTSFSGLFPLLSRGTLPLARVEELSQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPETG*ILGTKELISHPLKAYSLQSKTQLHLLQRPFLANHLLKFSISNSNA*SWLLT 481
            NP PAP EAL LLN K ILVYTSF GLFPLLSR   PL +V+E+SQTIDS++FTV NS++FA PLATTS+STNAKFEVRSPKRVQ+KFE+GVIGTPQ+TDS+ +PE   +LG K +  +P+K      +     + R   +   LKFS+   +A SWLLT
Sbjct:  139 NPNPAPNEALFLLNGKWILVYTSFVGLFPLLSRRISPLVKVDEISQTIDSDSFTVHNSVRFASPLATTSLSTNAKFEVRSPKRVQVKFEQGVIGTPQLTDSIEIPEFVEVLGQK-IDLNPIKGLLTSVQDTASSVARTISSQPPLKFSLPGDSAQSWLLT 297          
BLAST of CX300567 vs. ExPASy Swiss-Prot
Match: PG1_PEA (Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.015e-26
Identity = 65/160 (40.62%), Postives = 94/160 (58.75%), Query Frame = 2
Query:    2 NPTPAPTEALTLLNAKRILVYTSFSGLFPLLSRGTLPLARVEELSQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPETG*ILGTKELISHPLKAYSLQSKTQLHLLQRPFLANHLLKFSISNSNA*SWLLT 481
            NPTPAP E   LLN   +L+YT+ S L PLL+ G+LPL +++++SQTID+++FTV NS   + P A+ S S +A FEVRSP R+Q+ F+EG +  P++   + LPE   I G ++L   PL       +  +  + R       LK  I      SWL+T
Sbjct:  171 NPTPAPVEEPDLLNGNWVLLYTASSELLPLLAAGSLPLLKLDKISQTIDTDSFTVVNSTTLSSPFASFSFSVSASFEVRSPTRIQVTFKEGSLQPPEIKSKIDLPENINIFG-QQLSLGPLLQSLGPLENVVANISRVISGQSPLKIPIPGERTSSWLIT 329          
The following BLAST results are available for this feature:
BLAST of CX300567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAP_CITUN8.209e-5978.13Plastid-lipid-associated protein, chloroplastic OS... [more]
LIPC_SOLTU1.148e-5268.75Light-induced protein, chloroplastic OS=Solanum tu... [more]
LIPC_SOLDE1.148e-5268.75Light-induced protein, chloroplastic OS=Solanum de... [more]
PAP2_BRACM1.112e-4762.50Plastid lipid-associated protein 2, chloroplastic ... [more]
PAP2_ARATH1.452e-4761.88Probable plastid-lipid-associated protein 2, chlor... [more]
PAP2_ORYSJ3.236e-4763.98Probable plastid-lipid-associated protein 2, chlor... [more]
CHRC_CUCSA9.415e-4763.13Chromoplast-specific carotenoid-associated protein... [more]
PAP1_ARATH7.970e-4660.00Probable plastid-lipid-associated protein 1, chlor... [more]
PAP1_BRACM2.319e-4560.00Plastid lipid-associated protein 1, chloroplastic ... [more]
PG1_PEA7.015e-2640.63Plastoglobulin-1, chloroplastic OS=Pisum sativum G... [more]

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Properties
Property NameValue
Genbank descriptionC07011G06SK SaltLeaf1 Citrus clementina cDNA clone C07011G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300567 ID=CX300567; Name=CX300567; organism=Citrus clementina; type=EST; length=483bp
GAATCCAACCCCAGCTCCCACCGAGGCCTTAACTCTGCTAAATGCCAAAC
GGATTCTTGTGTACACATCTTTTTCAGGTTTGTTTCCGTTGTTGTCAAGG
GGAACATTGCCATTGGCGAGGGTGGAGGAGCTATCTCAGACAATTGACTC
AGAGAACTTCACGGTCCAGAACTCCATCCAGTTTGCTGGGCCATTGGCTA
CAACTTCCATTAGTACCAATGCCAAGTTTGAAGTGCGGAGCCCCAAGCGT
GTGCAGATCAAGTTCGAGGAAGGTGTCATTGGGACTCCTCAGGTAACTGA
TTCACTAGTGTTACCGGAAACTGGTTGAATTCTTGGGACAAAAGAATTGA
TCTCTCACCCTTTAAAGGCATACTCTCTTCAGTCCAAGACACAGCTTCAT
CTGTTGCAAAGACCATTTCTAGCCAACCACCTTTTGAAGTTCTCTATCTC
TAACAGCAATGCTTAATCATGGTTGCTAACCAC
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