CX300573

Overview
NameCX300573
Unique NameCX300573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig846 contig Ccv1_Contig846:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.318e-75
Identity = 141/236 (59.75%), Postives = 175/236 (74.15%), Query Frame = 3
Query:   18 NKRWSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILCL 725
            ++RWSL GMTALVTGGTRGIG+A VEELA FGA V+TCSR+Q +LD  L +W+ KGFKV+G VCD+SS  QR+ L+E+VTS F GKLNILINNA     K   + TAED S +  TNFE+ ++L QLAHPL KASGN SIVF SS  GV  +P  S+Y A KGA+NQ+TK+LACEWAKD+IR N VAPW+I T +I+   + P   + ++ +  + P+ RAGEP EVSSLV  LCL
Sbjct:   10 DRRWSLRGMTALVTGGTRGIGYAIVEELANFGAEVYTCSRSQNDLDECLEKWRRKGFKVSGPVCDVSSISQRQTLMESVTSSFNGKLNILINNAGTTIPKEATNFTAEDYSIIMGTNFEASYNLCQLAHPLLKASGNASIVFNSSAAGVIAVPLSSIYAASKGAINQVTKSLACEWAKDSIRVNAVAPWIINTPIIEAACQVPSQKKNIESLIGRAPMKRAGEPSEVSSLVTYLCL 245          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.700e-73
Identity = 132/234 (56.41%), Postives = 173/234 (73.93%), Query Frame = 3
Query:   24 RWSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIK-PFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILC 722
            RWSL G TALVTGG++GIG+A VEELA  GA V+TCSRN+ ELD  L  W+ KG  V GSVCDL SR +R+KL++TV  +F GKLNIL+NNA +   K   D T +D + +  TNFE+ +HLSQ+A+PL KAS NG+++F+SS+ G   +PSVSLY A KGA+NQ+TK+LACEWAKDNIR N+VAP VI T +++   ++ P   E +D    +TP+GRAG+P EVS+L+  LC
Sbjct:   16 RWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLC 249          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.406e-72
Identity = 138/237 (58.23%), Postives = 170/237 (71.73%), Query Frame = 3
Query:   15 RNKRWSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILCL 725
            +++RWSL   T LVTGGT+GIGHA VEE A FGA++HTC+RN+ EL+  L +W+ KGF+VTGSVCD S R +REKL++TV+S+F GKL+ILINN      KPT+D TAED S   STN ES +HLSQLAHPL KASG G+I+F+SS+ GV      S+Y A KGA+NQL +NLACEWA D IR N VAP VI T    P  E     EF   +  + P+GR GEP+EVSSLV  LC+
Sbjct:    6 QSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIAT----PLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVAFLCM 238          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.609e-68
Identity = 130/233 (55.79%), Postives = 165/233 (70.82%), Query Frame = 3
Query:   24 RWSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILC 722
            RW+L G TALVTGG+RGIG+  VEELA  GA V+TCSRNQ ELD  L +W++KGF V  SVCDLSSR +RE+ ++TV++ F GKLNIL+NNA I   K   D T ED S + S NFE+ +HLS LAHP  KAS  G++VFISS+ G   +P  ++YGA KGAM+QLT+ LA EWAKDNIR N V P VI TSM++   + PE  E LD +  +  + R GEP E++++V  LC
Sbjct:    4 RWNLEGCTALVTGGSRGIGYGIVEELANLGASVYTCSRNQKELDECLTQWRSKGFNVEASVCDLSSRSEREEFMKTVSNHFHGKLNILVNNAGIVIYKEAKDYTMEDYSHIMSINFEAAYHLSVLAHPFLKASERGNVVFISSISGASALPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSMVEMTIQDPEQKENLDKLIDRCALRRMGEPKELAAVVAFLC 236          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.043e-67
Identity = 129/233 (55.36%), Postives = 165/233 (70.82%), Query Frame = 3
Query:   24 RWSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILC 722
            RW+L G TALVTGG+RGIG+  VEELA  GA V+TCSRNQ EL+  L +W++KGFKV  SVCDLSSR +R++L+ TV + F GKLNIL+NNA I   K   D T ED S + S NFE+ +HLS LAHP  KAS  G++VFISSV G   +P  ++YGA KGAM+QLT+ LA EWAKDNIR N V P VI TS+++   + PE  E L+ +  +  + R GEP E++++V  LC
Sbjct:    4 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLC 236          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.976e-31
Identity = 85/235 (36.17%), Postives = 122/235 (51.91%), Query Frame = 3
Query:   21 KRWSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIA-FVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILC 722
            +R  L+   ALVT  T GIG A    LA+ GA V   SR Q  +D  +   K +G  VTG+VC +   E RE+L+ T   +  G ++ILI+NAA++ F    +D+  E    +   N ++   L++   P     G GSIV +SS+      PS+  Y   K A+  LTKNLA E A+ N+R N +AP +I+TS  +   E P   E    I     I R G+P+E + +V  LC
Sbjct:    8 RRNPLDNKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCHVGKAEDRERLVATAVKL-HGGVDILISNAAVSPFFGSLMDVPEEVWDKILDVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLALELAESNVRVNCLAPGLIRTSFSRVLWEDPARQE---SIKATFQIKRIGKPEECAGIVSFLC 238          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHRS4_MOUSE (Dehydrogenase/reductase SDR family member 4 OS=Mus musculus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 88/240 (36.67%), Postives = 118/240 (49.17%), Query Frame = 3
Query:    6 LIRRNKRWSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAI-AFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILC 722
            L RRN    L+   ALVT  T GIG A    LA  GA V   SR Q  +D  +   + +G  VTG VC +   E REKLI T     +G ++IL++NAA+  F    +D+T E    V S N  +   + +   P  +  G GS+V + SV G    PS+  Y   K A+  LTKN A E A  NIR N +AP +IKT       E     +F   I     I R G+P++ + +V  LC
Sbjct:    6 LTRRNP---LSNKVALVTASTDGIGFAIARRLAEDGAHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCHVGKAEDREKLITTALKRHRG-IDILVSNAAVNPFFGNLMDVTEEVWDKVLSINVTATAMMIKAVVPEMEKRGGGSVVIVGSVAGFTRFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTRFSSVLWEEKAREDF---IKEAMQIRRLGKPEDCAGIVSFLC 238          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.776e-28
Identity = 80/235 (34.04%), Postives = 122/235 (51.91%), Query Frame = 3
Query:   21 KRWSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAI-AFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILC 722
            +R  L    A+VT  T GIG A    LA+ GA V   SR Q  +D  +   + +G  VTG+VC +   E RE+L+ T  ++  G ++IL++NAA+  F    +D+T E    +   N +++  +++   P  +  G GS+V ++S+        +  Y   K A+  LTKNLA E A  NIR N +AP +IKTS  K   E     E    I ++  I R G+P+E + +V  LC
Sbjct:    8 RRDPLANKVAIVTASTDGIGLAIARRLAQDGAHVVISSRKQQNVDRAVAALQAEGLSVTGTVCHVGKAEDRERLVATALNL-HGGIDILVSNAAVNPFFGKLMDVTEEVWDKILDINVKAMALMTKAVVPEMEKRGGGSVVIVASIAAFNPFSGLGPYNVSKTALVGLTKNLALELAAQNIRVNCLAPGLIKTSFSKALWEDKAQEE---NIIQKLRIRRLGKPEECAGIVSFLC 238          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.184e-28
Identity = 82/235 (34.89%), Postives = 118/235 (50.21%), Query Frame = 3
Query:   21 KRWSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAI-AFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILC 722
            +R  L    ALVT  T GIG A    LA+ GA V   SR Q  +D  +   + +G  VTG+VC +   E RE+L+ T   +  G ++IL++NAA+  F    +D+T E        N ++   +++   P  +  G GS+V +SS+      P  S Y   K A+  LTK LA E A  NIR N +AP +IKTS  +      E  E +    R   I R GEP++ + +V  LC
Sbjct:    8 RRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKL-HGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLR---IRRLGEPEDCAGIVSFLC 238          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.184e-28
Identity = 82/235 (34.89%), Postives = 118/235 (50.21%), Query Frame = 3
Query:   21 KRWSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAI-AFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILC 722
            +R  L    ALVT  T GIG A    LA+ GA V   SR Q  +D  +   + +G  VTG+VC +   E RE+L+ T   +  G ++IL++NAA+  F    +D+T E        N ++   +++   P  +  G GS+V +SS+      P  S Y   K A+  LTK LA E A  NIR N +AP +IKTS  +      E  E +    R   I R GEP++ + +V  LC
Sbjct:    8 RRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKL-HGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLR---IRRLGEPEDCAGIVSFLC 238          
The following BLAST results are available for this feature:
BLAST of CX300573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
TRNH_DATST2.318e-7559.75Tropinone reductase homolog OS=Datura stramonium P... [more]
TRN1_DATST3.700e-7356.41Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
TRNH1_ARATH1.406e-7258.23Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
TRN2_HYONI1.609e-6855.79Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
TRN2_DATST1.043e-6755.36Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
DHRS4_BOVIN5.976e-3136.17Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]
DHRS4_MOUSE5.594e-2936.67Dehydrogenase/reductase SDR family member 4 OS=Mus... [more]
DHRS4_RABIT2.776e-2834.04Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
DHRS4_PONAB6.184e-2834.89Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]
DHRS4_HUMAN6.184e-2834.89Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionC07011G12SK SaltLeaf1 Citrus clementina cDNA clone C07011G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300573 ID=CX300573; Name=CX300573; organism=Citrus clementina; type=EST; length=729bp
AAGAGCTCATTCGTAGAAACAAAAGATGGTCTCTCAATGGAATGACTGCT
TTAGTCACTGGAGGAACCCGAGGCATAGGGCATGCTACTGTAGAAGAATT
AGCAAGATTTGGAGCAATTGTTCACACATGTTCACGTAATCAAATTGAGC
TCGATGCACGTTTACATGAATGGAAAAACAAAGGGTTCAAAGTAACGGGG
TCAGTATGTGACCTGTCATCCCGCGAACAGCGTGAGAAGCTAATAGAGAC
TGTCACCTCCATCTTTCAGGGGAAGCTCAACATTCTTATAAACAATGCTG
CAATAGCTTTCGTAAAACCAACGGTGGATATTACAGCTGAGGACATGTCA
ACTGTAAGCAGCACAAATTTCGAGTCTGTTTTTCATCTGTCTCAACTAGC
ACATCCTCTGTTTAAAGCATCAGGGAATGGAAGTATCGTATTTATTTCCT
CTGTTGGGGGCGTTAGAGGAATACCTTCTGTTTCTCTGTATGGTGCATAC
AAAGGAGCCATGAATCAACTAACGAAGAATTTGGCATGCGAGTGGGCAAA
GGATAACATCCGTACTAATACAGTTGCACCCTGGGTTATTAAAACCTCAA
TGATCAAACCTTTTGAGGAAGGTCCTGAAGGAAGTGAATTTCTGGATGGA
ATAGCACGTCAAACACCCATCGGTCGAGCTGGAGAGCCTGATGAGGTTTC
TTCATTGGTGGGCATTCTTTGCCTTCAGC
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